Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_I03
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    29   0.36 
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   0.62 
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   1.1  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    26   1.9  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   2.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   3.3  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   7.7  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 271 RSYHYLLSXSYFNNYQTNREGSRXSSGNYRTIRG 372
           R  HY       NNY+  REG   + G YR  RG
Sbjct: 79  RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRG 112


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +3

Query: 81  GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 254
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  E  G+ 
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351

Query: 255 LTVFETFLPLS--PVGLLLQQLP 317
                 +L LS  P  +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 95  SLPVWLWVCWPRKTHAIRTSTKDA 166
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 YLKRSYHYLLSXSYFNNYQTNREGSRXSSGNYRTIR 369
           Y + +Y    S  Y N+Y+ +R     S GNYR  R
Sbjct: 211 YRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRKER 246


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 192 QRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIPXLFRKLSDDSX 371
           +R+ R     P  SE   G S T F          + L+++PD+QG I      L  +S 
Sbjct: 20  RRLSRSSTITPSVSEYRSGFSKTAFGN--------IELEEIPDKQGNITRATSNLESNSY 71

Query: 372 EKNIGP 389
            K + P
Sbjct: 72  PKALDP 77


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 264  FETFLPLSPVGLLLQQLPDEQGRIPXLFRKLSDDSXEKNI 383
            F   LPL     LL+QLP+ + R+  L   L  D  +  I
Sbjct: 1147 FSVHLPLDNSSELLKQLPESEKRLNVLVATLEYDVPDLGI 1186


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 307 NNYQTNREGSRXSSGNYRTIRGKKT 381
           +N   +REG+  SS   RT+ G+K+
Sbjct: 20  SNTHLSREGTNRSSNVTRTVSGRKS 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,824
Number of Sequences: 5004
Number of extensions: 27663
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)