Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_I03
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 3.2
07_03_0512 - 18954515-18955972 28 3.2
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 27 5.6
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 5.6
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 27 5.6
02_04_0405 + 22637025-22637130,22637246-22637403,22637934-226380... 27 5.6
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 27 5.6
07_03_0524 - 19037638-19038294 27 7.3
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 96 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 248
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>07_03_0512 - 18954515-18955972
Length = 485
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 295 PTGDNGRNVSNTVR---LMPSVRSLQRGCP*IGRNTRCSAADLKSVC 164
P G +G+ + V L +VRSL +GR R AA++K+VC
Sbjct: 408 PLGVDGKRRDSFVEAAELERAVRSLMDDASEVGRKVREKAAEMKAVC 454
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 231 YNVVVLELAVIRAAVRQT*SPSASLVDVLIA*VFLGQHTQSQTGNDE 91
YN V+LE A +RA+ T + +LVD L +F+ G+DE
Sbjct: 500 YNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDE 546
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 136 SCYQNVDQGCRRTLSLPH-----CSAYYGQFKDNHVVANELKALASLYLKRSYHYL 288
S YQ V + + +PH CSA+Y + +HV + + R+ HYL
Sbjct: 14 SAYQEVKSSPKHAI-VPHNNLLGCSAFYNPVEGHHVQKPHIVPSCKVNFTRASHYL 68
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 231 YNVVVLELAVIRAAVRQT*SPSASLVDVLIA*VFL 127
YN V+LE A +RA+ T + +LVD L +F+
Sbjct: 422 YNRVILENATVRASAVSTLAKFGALVDALKPRIFV 456
>02_04_0405 +
22637025-22637130,22637246-22637403,22637934-22638099,
22638200-22638517,22638906-22639117
Length = 319
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 112 LGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLK 270
LG E +CY V + + T C+ YG D + +L+ A LY K
Sbjct: 256 LGKYREAMNCYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLERAAKLYDK 308
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 208 GRNTRCSAADLKSVCILGRRSDSMSLPRPAHPEPDR 101
G NT D KSV ++ SD P P EP+R
Sbjct: 662 GGNTSRRLNDRKSVIVIDSDSDEDEDPHPEQHEPER 697
>07_03_0524 - 19037638-19038294
Length = 218
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -3
Query: 250 MPSVRSLQRGCP*IGRNTRCSAADLKSVCILGRRSDSMSLPRPAHPEPDRQR 95
MPS+ G + R + GR + S P P HP PD +R
Sbjct: 1 MPSMMVRSAGIKRLRREMESRRRRSPELAPTGRVAKRSSTPPPLHPSPDDER 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,925
Number of Sequences: 37544
Number of extensions: 191076
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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