Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_H24
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   4.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.5  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   5.5  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -3

Query: 426 TKSTFIDTTLFNINNIYVVTATSSMRLMLWRSSVPNLRARLRGRSR 289
           ++  ++ T  F+ +  Y+VT T   ++ LW  S   +R    G  +
Sbjct: 358 SRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQ 403


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = -3

Query: 435 LYTTKSTFIDTTLFNINNIYVVTATSSM----RLMLWRSSVPNLRARLRGRSRLYIINL- 271
           +++T  T +  T+ N  N+   TA S      R  L RSS       L+ +  LY+ NL 
Sbjct: 548 VFSTDLTKVRHTISNDENLLRETANSDESGRNRTFLNRSSKKRAENSLKSKKELYLKNLN 607

Query: 270 --YQLLDWNQRQLS 235
             YQ+    +++LS
Sbjct: 608 QRYQIAHELEQELS 621


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 282 IINLYQLLDWNQRQLSSQHRRWVT 211
           +I LY+   WNQ+Q+   H   VT
Sbjct: 559 VIRLYETQSWNQQQVLKGHSLTVT 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,074
Number of Sequences: 5004
Number of extensions: 39453
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)