Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_H21
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 131 5e-31
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 128 3e-30
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 128 3e-30
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 124 4e-29
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 122 3e-28
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 108 4e-24
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 28 4.8
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 28 6.3
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 131 bits (316), Expect = 5e-31
Identities = 59/116 (50%), Positives = 76/116 (65%)
Frame = +2
Query: 212 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 391
L + + + LP K ATY+WIDG+GEHLR K RT+N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71
Query: 392 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDK 559
QADG NSD YL P A++ DPF G ++LVMCDT + M+PT +N+R C E K
Sbjct: 72 GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKK 127
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 504 TWSQQRATIASVVKKLTTNARDDEPWFGIEQEYILLDSD 620
T + R A ++KK++ D +PWFG+EQEY+++D D
Sbjct: 113 TATNHRQMCAELMKKVS----DQQPWFGMEQEYLIVDRD 147
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 128 bits (309), Expect = 3e-30
Identities = 57/96 (59%), Positives = 70/96 (72%)
Frame = +2
Query: 272 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 451
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 452 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDK 559
PFR+G + LVMC+TY +PT +N R C+E +K
Sbjct: 90 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEK 125
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 543 KKLTTNARDDEPWFGIEQEYILLDSD 620
K++ A D PWFG+EQEY LLD D
Sbjct: 120 KEVMEKAADQHPWFGMEQEYTLLDID 145
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 128 bits (309), Expect = 3e-30
Identities = 57/96 (59%), Positives = 70/96 (72%)
Frame = +2
Query: 272 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 451
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 452 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDK 559
PFR+G + LVMC+TY +PT +N R C+E +K
Sbjct: 93 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEK 128
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 543 KKLTTNARDDEPWFGIEQEYILLDSD 620
K++ A D PWFG+EQEY LLD D
Sbjct: 123 KEVMEKAADQHPWFGMEQEYTLLDID 148
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 124 bits (300), Expect = 4e-29
Identities = 54/110 (49%), Positives = 74/110 (67%)
Frame = +2
Query: 212 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 391
L + + + LP K ATY+WIDG+GE LR K RT N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71
Query: 392 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISC 541
QA+G NSD YL P A++ DPF +G+++LVMC+T M+PT +N+R +C
Sbjct: 72 GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNC 121
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 504 TWSQQRATIASVVKKLTTNARDDEPWFGIEQEYILLDSD 620
T + R A+++KK+ + PWFG+EQEY+++D D
Sbjct: 113 TATNHRQNCAAIMKKVA----EHHPWFGMEQEYLIVDRD 147
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 122 bits (293), Expect = 3e-28
Identities = 56/112 (50%), Positives = 75/112 (66%)
Frame = +2
Query: 212 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 391
L ++ ++ L KI ATY+WIDG+GE+LR K RT + +PK +D PIWN+DGSST
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71
Query: 392 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQE 547
QA G +SD YL P A Y DPF G + LVMCDT + M+PT +++R +C E
Sbjct: 72 GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAE 123
Score = 35.9 bits (79), Expect = 0.024
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 564 RDDEPWFGIEQEYILLDSD 620
RD PWFG+EQEY+++D D
Sbjct: 129 RDTRPWFGMEQEYLIVDRD 147
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 108 bits (259), Expect = 4e-24
Identities = 45/96 (46%), Positives = 65/96 (67%)
Frame = +2
Query: 278 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 457
YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 458 RRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCK 565
R G + + +C+T ++ +P +N R C + +K K
Sbjct: 95 RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAK 130
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 561 ARDDEPWFGIEQEYILLDSD 620
A+D EPWFG+EQE+ LL +D
Sbjct: 129 AKDQEPWFGMEQEFTLLGAD 148
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 565 LAFVVSFLTTDAIVALCWLH 506
LA V+SFLT AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 565 LAFVVSFLTTDAIVALCWLH 506
LA V+SFLT AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 125 KMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLP 256
K + HT E P+IL P++ + P + + +N+L P
Sbjct: 375 KQEEQEHTNGEKKPEILDEPIIQDEPRTMRPHEHCAIFNNLSTP 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,115
Number of Sequences: 27780
Number of extensions: 344999
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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