Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_H19
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 155 3e-39
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 153 1e-38
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 33 0.030
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 1.1
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 6.0
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 6.0
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.0
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 6.0
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 7.9
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 155 bits (376), Expect = 3e-39
Identities = 71/122 (58%), Positives = 93/122 (76%)
Frame = +2
Query: 86 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 265
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 266 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRXLIVERAXXLXIXVTNAAARLRS 445
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A L + VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 446 XE 451
E
Sbjct: 126 QE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 153 bits (371), Expect = 1e-38
Identities = 71/122 (58%), Positives = 92/122 (75%)
Frame = +2
Query: 86 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 265
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 266 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRXLIVERAXXLXIXVTNAAARLRS 445
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A L + VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 446 XE 451
E
Sbjct: 126 QE 127
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 32.7 bits (71), Expect = 0.030
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -2
Query: 301 FNIVN*DLTESIWEHMTGLLVGTVTDVGHQVLTLESPADSVVNTSRF-TPIPLKFV--IA 131
F+I + D+ ++ H+ G+ T + G + +T DS + + TP+P+KFV IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438
Query: 130 IRLMPDKSLRP 98
+ MP +LRP
Sbjct: 439 MHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 454 VLXGPEASGRIRHXDXEXXGSFHDQXPLLRRDTVSDLCAVL 332
VL + R+ H D + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 46 NIQDGYKTCLQADNRQKEDEEIYQASIGS 132
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 110 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 235
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 6.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 125 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 301
+ R D++ N RK G+ + F L NIGYG+ K + + +K +H++
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562
Query: 302 E 304
E
Sbjct: 563 E 563
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 46 NIQDGYKTCLQADNRQKEDEEIYQASIGS 132
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 77 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 226
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,360
Number of Sequences: 5004
Number of extensions: 34449
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -