Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_H18
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    59   2e-10
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    58   3e-10
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   8.1  

>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 58.8 bits (136), Expect = 2e-10
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +2

Query: 125 VKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGL 223
           VKFK+RCSR+LYTLV+ D +KAEKL+QSLPP L
Sbjct: 33  VKFKLRCSRYLYTLVVADAKKAEKLRQSLPPAL 65


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 58.0 bits (134), Expect = 3e-10
 Identities = 24/35 (68%), Positives = 32/35 (91%)
 Frame = +2

Query: 119 ENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGL 223
           ++VKFK+RCS++LYTLV+ D +KAEKL+QSLPP L
Sbjct: 31  KDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDL 65


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 126 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 257
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 204  CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 112
            C+ F +     ++ TR++ +L  +TL  T SGF
Sbjct: 988  CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 868,953
Number of Sequences: 5004
Number of extensions: 13042
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)