Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_H18
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    67   3e-12
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   0.52 
AL021175-4|CAA15971.1|  356|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +2

Query: 113 NPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 226
           N  N KFKVRC+ +LYTLV+ DK+KAEKLKQSLPPG+Q
Sbjct: 28  NSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQ 65


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 81  GKXPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 197
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>AL021175-4|CAA15971.1|  356|Caenorhabditis elegans Hypothetical
           protein Y6E2A.5 protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 27  STCRVKSKLSKPF*LRRGGKXPNRSK*RRTLRMSSSRFDAQ 149
           ++ ++ SK S P  +RRG +     +  +TL+   +RF+ +
Sbjct: 112 TSSKIDSKTSPPIEVRRGSRDSLDEQFLKTLKSQEARFEKE 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,787,033
Number of Sequences: 27780
Number of extensions: 70754
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)