Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_H16
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 149 2e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 149 2e-37
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 90 2e-19
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 90 2e-19
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 90 2e-19
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 56 2e-09
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 38 0.001
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.003
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 0.50
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 0.66
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.0
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 4.7
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 4.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 6.2
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 149 bits (362), Expect = 2e-37
Identities = 73/126 (57%), Positives = 87/126 (69%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXX 182
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKK 82
Query: 183 XNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCG 362
Y+TP LAVL++YKV+++G + RLRREC CGA FMA +DR YCG
Sbjct: 83 KTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCG 140
Query: 363 KCHSTM 380
+CH T+
Sbjct: 141 RCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 149 bits (362), Expect = 2e-37
Identities = 73/126 (57%), Positives = 87/126 (69%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXX 182
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKK 82
Query: 183 XNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCG 362
Y+TP LAVL++YKV+++G + RLRREC CGA FMA +DR YCG
Sbjct: 83 KTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCG 140
Query: 363 KCHSTM 380
+CH T+
Sbjct: 141 RCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 23 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 99 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 175 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 251 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/48 (87%), Positives = 46/48 (95%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
I++VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 327 IDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 56.4 bits (130), Expect = 2e-09
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
+ +K +++ K GIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 23 VSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 3 IEHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 128
I +K KIQ + +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 24 ISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 12 VKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
+K I I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 29 LKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 0.50
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 458 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 354
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.3 bits (60), Expect = 0.66
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 126 PSGYCSPRGYVHLPAAFQRRSTSVDWEGF 40
PS + PRG V+ P+ +RR + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 398
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +2
Query: 71 RWKAAGRWTY----PL--GLQYPEGIHPPPGVEASWW 163
RWKAA R PL EG+H P G + WW
Sbjct: 99 RWKAARRIASREHEPLLQSRSLEEGLHAPIGKQQIWW 135
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 371 VTLPAVVTVLHHRHEHSGAALLAC 300
VTL A+ T+L + H H L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 48 PNQQRLIFAGKQLEDGRTLSDYNI 119
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,124
Number of Sequences: 5004
Number of extensions: 30970
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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