Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_H14
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 39 0.002
Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H... 28 3.4
AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H... 28 3.4
U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 25 MKIGLCAYSGYKIYPGHGKTM 87
MK+ C YSGYKI+PGHGK +
Sbjct: 1 MKVETCVYSGYKIHPGHGKRL 21
>Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical
protein C47A4.2c protein.
Length = 383
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 367 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 206
S A ++ ++C TS + + ++A T+A F + L+ F C SW F
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 178
>Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical
protein C47A4.2b protein.
Length = 451
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 367 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 206
S A ++ ++C TS + + ++A T+A F + L+ F C SW F
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 246
>Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical
protein C47A4.2a protein.
Length = 445
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 367 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 206
S A ++ ++C TS + + ++A T+A F + L+ F C SW F
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 240
>Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical
protein F57C7.2b protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 144 WAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGAKSDLHFD-LTKRK 4
WA H+ FR + TL +GL + ++ +G FD +TK K
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNK 108
>Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical
protein F57C7.2a protein.
Length = 630
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 144 WAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGAKSDLHFD-LTKRK 4
WA H+ FR + TL +GL + ++ +G FD +TK K
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNK 108
>AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H
exchanger isoform 5b protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 144 WAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGAKSDLHFD-LTKRK 4
WA H+ FR + TL +GL + ++ +G FD +TK K
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNK 108
>AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H
exchanger isoform 5a protein.
Length = 630
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 144 WAASHFEFRNVKVFPSTLXHGLAMAWIYFVSTIGAKSDLHFD-LTKRK 4
WA H+ FR + TL +GL + ++ +G FD +TK K
Sbjct: 61 WAFKHYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFDVITKNK 108
>U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical
protein C18H9.5 protein.
Length = 464
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 355 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 206
+MA + S FIL + I + + A W+ + L V FF ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,911
Number of Sequences: 27780
Number of extensions: 168438
Number of successful extensions: 292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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