Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_H06
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   134   7e-34
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   134   7e-34
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  134 bits (323), Expect = 7e-34
 Identities = 72/136 (52%), Positives = 80/136 (58%)
 Frame = +2

Query: 131 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 310
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 311 VRIPKEQGSPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKTQFWRYFXXXX 490
           VRIPKEQG                                      DK TQF RYF    
Sbjct: 61  VRIPKEQGF-LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNL 119

Query: 491 XXXXXXXXTSLCFVYP 538
                   TSLCFVYP
Sbjct: 120 ASGGAAGATSLCFVYP 135



 Score = 74.1 bits (174), Expect = 8e-16
 Identities = 35/51 (68%), Positives = 38/51 (74%)
 Frame = +1

Query: 289 QGYRRCLRPYPQGAGVSFSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 441
           +G   C    P+  G   S+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG
Sbjct: 54  KGMIDCFVRIPKEQGF-LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLG 103


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  134 bits (323), Expect = 7e-34
 Identities = 72/136 (52%), Positives = 80/136 (58%)
 Frame = +2

Query: 131 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 310
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 311 VRIPKEQGSPFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKTQFWRYFXXXX 490
           VRIPKEQG                                      DK TQF RYF    
Sbjct: 61  VRIPKEQGF-LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNL 119

Query: 491 XXXXXXXXTSLCFVYP 538
                   TSLCFVYP
Sbjct: 120 ASGGAAGATSLCFVYP 135



 Score = 74.1 bits (174), Expect = 8e-16
 Identities = 35/51 (68%), Positives = 38/51 (74%)
 Frame = +1

Query: 289 QGYRRCLRPYPQGAGVSFSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 441
           +G   C    P+  G   S+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG
Sbjct: 54  KGMIDCFVRIPKEQGF-LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLG 103


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 512 LRRHHRRPDYQRSNARTASSCQHRP 438
           L+RHH   ++      TA    HRP
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHHRP 162


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 56  VIPHPRVPQLPPRHIHLVKIT 118
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,711
Number of Sequences: 438
Number of extensions: 2739
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)