Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_H04
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   103   6e-23
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    30   0.73 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    30   0.73 
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   2.2  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   2.2  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    28   2.9  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   6.8  
U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  103 bits (246), Expect = 6e-23
 Identities = 54/103 (52%), Positives = 69/103 (66%)
 Frame = +3

Query: 24  IAVGLRKGHKTTKXSAGRKGXTXKAIXIRPAXLKGLQTKHSKFVRDLVREVVGHAQYEKR 203
           +AVGL KGH  T+    +          R    KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLPVKQ----------RQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 204 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 332
            +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+   RK
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 108 RPAXLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 245
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 108 RPAXLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 245
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 120 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 239
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 120 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 239
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 105 IRPAXLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 239
           ++   +  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 153 VRDLVREVVGHAQYEKRAMELLKV 224
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 162 LVREVVGHAQYEKRAMELLKV 224
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 228 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM 326
           K+ R +KF   R L  H+R + K +ELS  +  M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,348,209
Number of Sequences: 27780
Number of extensions: 120531
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)