Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_H03
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 206 3e-54
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 27 1.7
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 27 2.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 27 2.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 3.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.8
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 6.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 6.8
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 206 bits (502), Expect = 3e-54
Identities = 94/169 (55%), Positives = 124/169 (73%)
Frame = +1
Query: 124 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 303
+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39 KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEME 98
Query: 304 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 483
D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 99 DGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPY 158
Query: 484 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGE 630
F+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +GE
Sbjct: 159 FVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGE 207
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 134 DPTVSLSKKQSAMTTQSWH-FHRPKW 208
DP ++ + Q + T+SWH FH +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 439 QLNHQLAVCGLV---FHISLKDTELWI 368
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 439 QLNHQLAVCGLV---FHISLKDTELWI 368
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 409 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 299
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 116 PPXARTDPTVSLSKKQSAMTTQSWHFHRPKW 208
PP A+ DP + + K + A+ ++ H +W
Sbjct: 2106 PPWAKGDPAIFVQKNREALESKYVSAHLHEW 2136
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 154 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 267
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 148 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 276
+ +E SD++ ++A++ EQ+ R D LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +1
Query: 364 VVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGM 543
V I PSV Y K + + P ++ + G E + +YRP DD +RG
Sbjct: 647 VSEIIQVPSV-YHKHI-VGPKGTTLNAIIGKSEENVIVQLGKVSYRPDSTDDDVYIRGFS 704
Query: 544 RAVEFKVVE 570
+ VE V E
Sbjct: 705 KDVERVVSE 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,422
Number of Sequences: 5004
Number of extensions: 54209
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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