Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_H01
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 32 0.35
07_03_0051 - 12831167-12832188,12832245-12832512 30 1.4
09_04_0222 + 15825878-15826451,15826542-15827017 29 2.5
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.3
10_08_1058 + 22608852-22609172,22609257-22610651 28 4.4
10_01_0311 + 3441911-3443035 28 4.4
12_02_0305 - 17235832-17236379,17237345-17237444 28 5.8
11_02_0111 + 8396304-8396378,8396697-8397113,8397220-8397483,839... 28 5.8
10_01_0144 - 1705429-1706250 28 5.8
08_02_0168 - 13640894-13641973 28 5.8
05_06_0124 - 25822176-25822633,25822738-25825420 28 5.8
11_02_0112 + 8447754-8447828,8448352-8448514,8448680-8448768,844... 27 7.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 7.6
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 27 7.6
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 278 YILILTLMFAFSAILYVIYKS-YISPVFYKKELTEVGFDHIPQG 406
Y+L+L + +S LYV Y S Y+ + ++ VGF H+ G
Sbjct: 232 YVLVLLVTGRYSQRLYVAYNSTYVLGMLLAMQIRFVGFQHVQSG 275
>07_03_0051 - 12831167-12832188,12832245-12832512
Length = 429
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 143 ITEAVSSNTACPDTGPKAETTNIFLLLQKNITIESSKHVFSSIVEYIL-ILTLMFAFSAI 319
+ + NT C D K + T + + N+ I S K+++S+I+E T+ + +
Sbjct: 43 VVDGFMRNTNCDDPELKEKLTRLCTVPDPNLIICSYKYIYSTIIELACKTTTVKTRYVVM 102
Query: 320 LYVIYKSY 343
I KSY
Sbjct: 103 SEEILKSY 110
>09_04_0222 + 15825878-15826451,15826542-15827017
Length = 349
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 546 ASIERTLPTLSSLVSATANHPLXXXXGNLLPIRLEAWARLIRLPLSGP 403
A+ LP + A A PL LP+ + W RLPLS P
Sbjct: 14 AAARLLLPVSGAARGAAARLPLPEPPCTRLPLPEQPWGTAARLPLSEP 61
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 417 GGGSVAPKPPDGWAANCPLPTPMGG 491
G G+ P PP G P P P+GG
Sbjct: 1105 GAGAPPPPPPPGGITGVPPPPPIGG 1129
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 227 FGVAEKCLLFLLSVRCRGTPCSKRRLP 147
FG+A CLL + TPC + RLP
Sbjct: 222 FGIATLCLLIASAAFLAATPCYRVRLP 248
>10_01_0311 + 3441911-3443035
Length = 374
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +3
Query: 417 GGGSVAPKP--PDGWAANCPLPTPMGG--SRSPKQGSL 518
G G+VAP P G AA PLP MGG + +P G+L
Sbjct: 255 GAGAVAPLPGAAGGDAAAAPLPGDMGGDAALAPLPGAL 292
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 429 VAPKPPDGWAANCPLPTPMGGSRSPKQGSLKL 524
VAP P A P PTP GGS+ P++ + L
Sbjct: 111 VAPSQPPTIAPTQP-PTPSGGSQCPRENVIAL 141
>11_02_0111 +
8396304-8396378,8396697-8397113,8397220-8397483,
8398237-8398608
Length = 375
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 439 LGATDPPPLVRTLRYMIEADFCQFL 365
+GAT PP + + + E DF QFL
Sbjct: 180 IGATTPPSVAKLYQNQFEKDFSQFL 204
>10_01_0144 - 1705429-1706250
Length = 273
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 422 RISRAQASRRMGSKLPPPYPNGW 490
+ R Q RR G LPPP P+GW
Sbjct: 50 KAGRQQGRRRWGL-LPPPTPDGW 71
>08_02_0168 - 13640894-13641973
Length = 359
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 73 ELNEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKH 210
E+ ++ + K +GG T R+HG + G P H+ S H
Sbjct: 217 EMQQVYTFDMQKSSGGDQT---RNHGDKNSNSGGPVHKKSSSQRHH 259
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 444 PDGWAANCPLPTPMGGSRSPKQGSLKLAASSLS 542
PDG+AA PL + SR+ G++ ++ +SLS
Sbjct: 501 PDGFAAGMPLLQELDLSRNQLSGAIPVSIASLS 533
>11_02_0112 +
8447754-8447828,8448352-8448514,8448680-8448768,
8448860-8449123,8449635-8449907
Length = 287
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 439 LGATDPPPLVRTLRYMIEADFCQFL 365
+GAT PP + + + E DF QFL
Sbjct: 125 IGATTPPMVTKLYQNQFEKDFLQFL 149
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 420 GGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSLK 521
G S P PP N P P P+ G GS K
Sbjct: 786 GASGRPHPPSSKGLNAPAPPPLLGRGREATGSAK 819
>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 160 FEHGVPRHRTESRNNKHF----SATPKEYND*VIKTRIQFDR 273
F H +P SRN++HF S + Y+ +T QFDR
Sbjct: 1701 FSHSIPNDGYPSRNSRHFDRQNSGNERRYDRQNERTDRQFDR 1742
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,294,148
Number of Sequences: 37544
Number of extensions: 377386
Number of successful extensions: 1629
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -