Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G22
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   2.7  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   3.5  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   4.6  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   6.1  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    25   6.1  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   8.1  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 319 NPPVLLCHGLADSATSFRPLIK 384
           +PPVL+ HGL  S  ++R L K
Sbjct: 20  HPPVLIFHGLLGSKRNWRSLAK 41


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 279 LGPDVRGGLGRLLQSPGSALPWPSRLRDQLPPSNQIDAREVLFYRH 416
           +G    GGLG LL        W    + Q   + QI ARE  FYRH
Sbjct: 103 IGTIASGGLGWLLGPSIGRKIWTLLHKSQ---ARQIAAREQEFYRH 145


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +1

Query: 340 HGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDRFPPGLMINIYD 480
           HGL    + F+ ++   P        D  GCG S +  P   I   D
Sbjct: 106 HGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLSRQAFPNQRIGSVD 152


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 RPLIKLMPEKFYFIGIDLPGCGKSD 444
           R  IK    KF+F+GID P  G SD
Sbjct: 218 RKAIKFPEHKFHFVGID-PEGGVSD 241


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 302 ATTHIRPQGTCMYHSFSNKLISKINF 225
           AT H+ PQ  C Y SF    +S+  F
Sbjct: 285 ATIHVTPQEHCSYASFETN-VSQFQF 309


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 325 PVLLCHGLADSATSF 369
           PV++ HGL D+ TSF
Sbjct: 27  PVVIWHGLGDTPTSF 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,806
Number of Sequences: 5004
Number of extensions: 35888
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)