Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G22
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39674-1|AAA80413.2|  137|Caenorhabditis elegans Hypothetical pr...    30   0.78 
U88315-14|AAB42366.2|  355|Caenorhabditis elegans Hypothetical p...    29   1.4  
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   5.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   5.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   5.5  
U88315-13|AAN84844.1|  359|Caenorhabditis elegans Hypothetical p...    27   7.3  
U88315-12|AAB42367.1|  444|Caenorhabditis elegans Hypothetical p...    27   7.3  
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC024205-2|AAF36046.1|  308|Caenorhabditis elegans Hypothetical ...    27   7.3  
U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U39674-1|AAA80413.2|  137|Caenorhabditis elegans Hypothetical
           protein C06E2.5 protein.
          Length = 137

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = +3

Query: 207 KFVKFLKIYFR--NEFIRKRMVHTGSLGPDVRGGLGRLLQSPGSAL-----PWPSRLRDQ 365
           KF   L+ Y R  NEFIR+  VH   +      G   ++Q P +A+     P   R R  
Sbjct: 42  KFAITLQSYIRRRNEFIRRMRVH--EMREQAEAGPSEIVQQPSNAVGATEEPAAKRARTD 99

Query: 366 LPPSNQIDAREV 401
            P  N+ +  EV
Sbjct: 100 TPEPNKENTTEV 111


>U88315-14|AAB42366.2|  355|Caenorhabditis elegans Hypothetical
           protein C37H5.2 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 325 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR 447
           P++L HG       +   IK + +      IDLPG G+S R
Sbjct: 73  PIVLIHGFGAGVALWGSAIKRLAQFQNVYAIDLPGFGRSSR 113


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 265 YIQVPWGRMCVVAWGDCCNPPVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSD 444
           YI++   R+  V  G    P +L  HG  +   S+R  +K   +K+  + ID  G   SD
Sbjct: 121 YIKLKKVRLHYVQTGSDDKPLMLFIHGYPEFWYSWRFQLKEFADKYRCVAIDQRGYNLSD 180

Query: 445 R 447
           +
Sbjct: 181 K 181


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 234 FRNEFIRKRMVHTGSLGPD--VRGGLGRLLQSPGSALPWPSRLRDQLPPSNQIDAREVLF 407
           F +E +R+R V      P   +    GR    P S+L + S+      P  + D+ E L 
Sbjct: 178 FVDEEMRERSVKLIEAAPSSYIAPDRGRSPARPHSSLGFDSQDNRFRTPEPRDDSPEQLL 237

Query: 408 YRHRPPGLRQVGPVPAGPDD 467
            + RP  +RQ G  P  P +
Sbjct: 238 GQRRPIVMRQKGAPPPPPPE 257


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 361 SRSLLGHGRAEPGDCSNRPKPPRTSGPKEP 272
           S  L G G   P   +  P PPRT  P  P
Sbjct: 246 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 361 SRSLLGHGRAEPGDCSNRPKPPRTSGPKEP 272
           S  L G G   P   +  P PPRT  P  P
Sbjct: 267 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 361 SRSLLGHGRAEPGDCSNRPKPPRTSGPKEP 272
           S  L G G   P   +  P PPRT  P  P
Sbjct: 252 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281


>U88315-13|AAN84844.1|  359|Caenorhabditis elegans Hypothetical
           protein C37H5.3b protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 325 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR 447
           P++L HG       +   IK + +       DLPG G+S R
Sbjct: 77  PIVLIHGFGAGVALWGSAIKRLAQFQTVHAFDLPGFGRSSR 117


>U88315-12|AAB42367.1|  444|Caenorhabditis elegans Hypothetical
           protein C37H5.3a protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 325 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR 447
           P++L HG       +   IK + +       DLPG G+S R
Sbjct: 162 PIVLIHGFGAGVALWGSAIKRLAQFQTVHAFDLPGFGRSSR 202


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 346 GHGRAEPGDCSNRPKPPRTSGPKEPVC 266
           GHG         RP+PPR    +EP C
Sbjct: 48  GHGHGHHHGRPPRPRPPRPPVSREPEC 74


>AC024205-2|AAF36046.1|  308|Caenorhabditis elegans Hypothetical
           protein Y73C8B.3 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 328 VLLCHGLADSATSFRPL-IKLMPEKFYFIGIDLPGCGKSDRFPPGLMINI 474
           V+  HG   S   F+ +  KL   K  FIG++ PG   ++ +P    INI
Sbjct: 40  VVAFHGSPGSHNDFKYIRSKLDDLKIRFIGVNYPGFTFTNEYPDQKHINI 89


>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 331 EPGDCSNRPKPPRTSGPKEPV 269
           +P    +RP PP+   PKEP+
Sbjct: 120 KPTQVISRPLPPKPQAPKEPI 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,219
Number of Sequences: 27780
Number of extensions: 226379
Number of successful extensions: 593
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)