Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G18
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   0.63 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 264 DTSKTVKAVDGYITGVTGRRLKIPETWNNPNGDWRV--GVLHPYSIYPT 404
           DT    K    YI  VTG  L + +  N+ +  WR+   + +PY  Y T
Sbjct: 188 DTEDKCKDTFAYIADVTGFALLVYDFRNSRS--WRITNNLFYPYPPYGT 234


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 333  PETWNNPNGDWRVGV 377
            P T NNP+ D+ + V
Sbjct: 1909 PSTQNNPSSDYSIAV 1923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 333  PETWNNPNGDWRVGV 377
            P T NNP+ D+ + V
Sbjct: 1905 PSTQNNPSSDYSIAV 1919


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 343 HVSGIFSLRPVT 308
           +V+G+F+LRP T
Sbjct: 935 NVAGVFNLRPAT 946


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 228 IERFDCSGCG 257
           +ERFD  GCG
Sbjct: 573 LERFDFCGCG 582


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264 DTSKTVKAVDGYITGVTGRRLK-IPETWNNPNGDWRVGVL 380
           D ++ +    G +   T    + IPE +  P   W +G +
Sbjct: 622 DVTQCISCRQGTVPDETHSACRDIPEEFLRPESGWAIGAM 661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,858
Number of Sequences: 438
Number of extensions: 2539
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)