Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G16
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    30   0.25 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    29   0.58 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.77 
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   2.3  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   5.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   9.5  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 228 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 362
           ++DYA K     L      +  DDDL+++S  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 435 PENVWSG-PTIRPFVALFDNYHKNVIRPEFVTPNEETEQPLTST 563
           P N ++G PT   FVA FD + +   +    + N+ +++PLT+T
Sbjct: 483 PYNSYNGTPTSSRFVAFFDRHRQESEKATPPSLNKVSQEPLTAT 526


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 21/90 (23%), Positives = 36/90 (40%)
 Frame = +3

Query: 279 QDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGP 458
           +  T   DLL+V +++   D +NA       ++     + R  +        PEN+    
Sbjct: 550 EQETIPSDLLKVRKDLL--DDSNAAKDTMDKVKKHLKSLLRVGDTARKEFTWPENMPKPC 607

Query: 459 TIRPFVALFDNYHKNVIRPEFVTPNEETEQ 548
            +   V     YH+ V+R  F+    E EQ
Sbjct: 608 EVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 224 TNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSL 108
           TN C+   ++   CV L   H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 276 AQDSTTDDDLLRVSEEMFNADI 341
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 478 HYSTTITRM*SDQSLLRRMKKRNNHLHQHYSCYGXHQEP 594
           +YST  T++ SD SLL+  ++ +       S +  H +P
Sbjct: 269 NYSTDFTKIQSDSSLLQNRQQNHRIETDQLSHFPDHLDP 307


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 522 VTPNEETEQPLTSTLFLLRXP 584
           V  +E TEQPLTS L   R P
Sbjct: 268 VAVDERTEQPLTSDLLPSRLP 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,956
Number of Sequences: 5004
Number of extensions: 50394
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)