Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G16
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 31 0.60
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 31 0.80
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 29 2.4
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 29 3.2
09_03_0127 + 12573429-12574857,12575269-12575903 28 5.6
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 28 5.6
11_01_0470 + 3645010-3647686,3647804-3648168 27 9.8
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 27 9.8
02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224 27 9.8
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -1
Query: 257 VALLLRIVNDTTNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSLG*VISVTYPQ 78
+ L LR +T + C Y LES+ + V L++ IAD+ D DL G + +
Sbjct: 470 ILLGLREKYETYHKCKYTLESINAAV-YLSARYIADRHLPDKAIDLIDEAGSRARMESFK 528
Query: 77 KNKENQCN 54
+ KE QC+
Sbjct: 529 RKKEEQCS 536
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 339 INNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTIRPFV 476
+N A+N +Q +Q + P D +SN++N + T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 113 CGPDLQQHPSQLDQQSCDWSARQHSSK 193
CGPD Q+ Q Q+S W +++ +SK
Sbjct: 320 CGPDAQRTEKQAKQESRKWGSKKGTSK 346
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 282 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 374
D T D L VS EM+ D NN +Y+Q +L
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQRHL 703
>09_03_0127 + 12573429-12574857,12575269-12575903
Length = 687
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 171 QQGNTAQNTFQQIGTVVGGVVDYAKKKSYEDLLR 272
Q+ TA +T + T + A+K +EDLLR
Sbjct: 356 QRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLR 389
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
Frame = +3
Query: 261 DLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVP- 437
D + D D +L +++ +A I+ N +++N+Q + + Q + N+P
Sbjct: 65 DFILTYTDEDGDIVMLDDDDDLHDAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSDNIPL 124
Query: 438 ENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQPLTSTLFLLRXPSGASLLS*STK 617
+ + + ++ D K + P ET L+ + P A L+ K
Sbjct: 125 RSTTTEDPLAHIKSVIDEVLKPISMKSIQEPVPETLAKLSHEVLEAASPQLAELIKPFVK 184
Query: 618 GITQLNEYP 644
+T N P
Sbjct: 185 LVTPSNNNP 193
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 318 EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLL-NVPENVWSGPTIRPFVALFDN 491
EE+F + N + YI +L GK +S + ++L ++PE ++ PTIR F+N
Sbjct: 442 EELF-LESNQLYGYIPSSL-GKLNVLSVLSMSNNSLHGSIPEEIFRIPTIRKISLSFNN 498
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +3
Query: 468 PFVALFDNYHKNVIR-PEFVTP---NEETEQPLT 557
P V LFD+ H N++ PEF + + + EQP T
Sbjct: 337 PIVTLFDSIHGNILNTPEFTSSGNMSNDIEQPKT 370
>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
Length = 508
Score = 27.5 bits (58), Expect = 9.8
Identities = 25/108 (23%), Positives = 47/108 (43%)
Frame = +3
Query: 66 FFVFLGVCHADDLAQAAGQIFNNILPNLISNHVTGQQGNTAQNTFQQIGTVVGGVVDYAK 245
F L C A +L + + LP+ I + Q N+ I + GGVV +A
Sbjct: 106 FPTVLYACSALELLDLSNNQLSGRLPDDIDKLSSDMQHLNLSNSIVPISVIAGGVVIFAV 165
Query: 246 KKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTT 389
+A++ D + +S++M + ++NA + +++ G TT
Sbjct: 166 GCVVASCRCRARND--DMTPIVLSDKMEDHLVHNAVDVNRISSTGTTT 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,097,980
Number of Sequences: 37544
Number of extensions: 318421
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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