Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G16
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z69659-3|CAA93484.1|  231|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      27   8.7  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   8.7  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +3

Query: 255 YEDLLRQAQDSTTDDDLLRVSEEM--FNADIN-NAFNY-IQVNLQGKTTPMSRNDEAQSN 422
           +   +RQ  D T+D+D+ R+  EM   N  ++   FN+ +++ L G            + 
Sbjct: 505 FSSFIRQEGDKTSDEDIYRICSEMRRTNGKVHKKMFNFELELTLAGSNKSKEYQSHGSNL 564

Query: 423 LLNVPENVWSGPTIRPFVALFDNYHKNVI 509
            LN    +     I  + A  +  +KNVI
Sbjct: 565 TLNSERVIHEAMEIPIYQASLNKSYKNVI 593


>Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical
           protein F32G8.3 protein.
          Length = 129

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 568 NSVDVSGCSVSSFGVTNSGLITFL**LSNS-ATKGLIVGPLHTFSGTFNKF 419
           + +++ G  +SS+   NSG+   +  L  S  ++G++ GPL  F G  N F
Sbjct: 77  SGINLIGLPISSYNCRNSGMSANVNALQQSHQSQGMMQGPLAGFGGLLNNF 127


>Z69659-3|CAA93484.1|  231|Caenorhabditis elegans Hypothetical
           protein F07C6.3 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 480 LFDNYHK-NVIRPEFVTPNEETEQPLTSTLFLL 575
           +F+N+ K NV+ P+FV  N     PL S++F +
Sbjct: 1   MFNNHTKFNVLYPQFVVSNNMRLSPLFSSVFFV 33


>U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical
           protein C07A12.7a protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 549 VVPFLHSA*QTLV*SHSCDSCRIVQQKVLLLVRSIHSQERLINSIVLHHS 400
           VVP   +A +  + S   D+CR +QQ+VL L+R + + E     ++++ S
Sbjct: 275 VVPRKETADELQLLSDLNDTCRHMQQRVLDLIRYVSNDEVTYELLMVNDS 324


>U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical
           protein C07A12.7b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 549 VVPFLHSA*QTLV*SHSCDSCRIVQQKVLLLVRSIHSQERLINSIVLHHS 400
           VVP   +A +  + S   D+CR +QQ+VL L+R + + E     ++++ S
Sbjct: 241 VVPRKETADELQLLSDLNDTCRHMQQRVLDLIRYVSNDEVTYELLMVNDS 290


>Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical
           protein T08G11.4 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 8   VRRDCARSYALIK-YENYIDFLC 73
           VR  CAR  A +   ENYIDF+C
Sbjct: 423 VRLKCARENARVYGVENYIDFIC 445


>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 309 RVSEEMFNADINNAFNYIQVNLQGKTTP 392
           RVS+E+   DI+N +N++Q + Q K  P
Sbjct: 58  RVSKELSFEDIHNEYNFMQFSEQLKAMP 85


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 252  SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQ 365
            +Y+D+LR  ++   DD+ L    +   A+++NA   +Q
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQ 1605


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 252  SYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYIQ 365
            +Y+D+LR  ++   DD+ L    +   A+++NA   +Q
Sbjct: 1568 NYDDILRSIENEIRDDNELTAKNQEILAELSNAEQTLQ 1605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,459
Number of Sequences: 27780
Number of extensions: 285667
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)