Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G15
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 64 7e-12
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 64 9e-12
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 29 0.31
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 28 0.71
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 0.93
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 2.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 5.0
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 5.0
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 24 8.7
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 64.5 bits (150), Expect = 7e-12
Identities = 33/61 (54%), Positives = 42/61 (68%)
Frame = +1
Query: 178 SLSXDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 357
S +VREV G A YE+R MEL++ S+DKRA K K+RLGT RAK K EEL++V+
Sbjct: 36 SFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSS 95
Query: 358 R 360
R
Sbjct: 96 R 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 64.1 bits (149), Expect = 9e-12
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +1
Query: 193 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 360
+VREV G A YE+R MEL++ S+DKRA K K+RLGT RAK K EEL++V+ R
Sbjct: 41 IVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 29.1 bits (62), Expect = 0.31
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 175 PSLSXDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLA 351
PSL+ + ++ HA ++ L+VSKD KRR+ THI + +R LS V
Sbjct: 1111 PSLTESCI--LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRN 1161
Query: 352 QMR 360
Q+R
Sbjct: 1162 QLR 1164
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 0.71
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 387 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 262
+V SL G L + A+FFT PL ++VCA + + + ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 0.93
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 323 SVKNLATCSLR*GRQPPRLITITI 394
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 193 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 324
++RE +G + K + ++ K ALKF+ R+L H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 241 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 357
+LLK ++ + K K+RL +I K K+EE+++++A++
Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 408 FIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 232
++ M + +GG + SEHV K F L V ++ ++ S + LK + S
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175
Query: 231 LLILS 217
LL ++
Sbjct: 176 LLTIT 180
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 5.0
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 266 LSFDTLSNSIALFSY*ACPTTS 201
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 139 GQLD*RVFKRNTPSLSXDLVREVVGHAQYEKRA 237
G +D +V++ P LS EVVGH ++++ A
Sbjct: 61 GFVDLKVYR--VPDLSRPSFNEVVGHKKFDETA 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,196
Number of Sequences: 5004
Number of extensions: 25572
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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