Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G14
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 38 8e-04
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 31 0.088
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 28 0.62
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 0.82
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 2.5
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 4.4
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 4.4
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 25 4.4
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 24 7.7
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 24 7.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 24 7.7
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 24 7.7
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 37.5 bits (83), Expect = 8e-04
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 128 EKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENI 307
EKEA+EWIE L K D L+ G +LC++ + ++ + + F MENI
Sbjct: 6 EKEAREWIEETLHTKLNAQLDLLDQLQSGVILCRICKEALGANI-RYKESNMPFVQMENI 64
Query: 308 TNF 316
+ F
Sbjct: 65 SAF 67
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 30.7 bits (66), Expect = 0.088
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 134 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKP 250
EA++W+E ++ + F D L +G VLCQL K P
Sbjct: 69 EAKKWLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYP 107
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 27.9 bits (59), Expect = 0.62
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 44 EKALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVL 223
EK ++ S++ + + ++A K K + E +K P E V+K+ V
Sbjct: 165 EKGKSKPSKKSVKAKKKLRLAEKPASNNSKAGKSSQESKKSSK-APAESAAAVIKEDKVS 223
Query: 224 CQLINKLKPGSVPKINTTGGQ 286
+ +K KP P N+T Q
Sbjct: 224 DRKKSKKKPKKTPVSNSTASQ 244
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 0.82
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 252 PGFSLLMSWQR----TVPSLRTSSNSSPGGNLAPRTPSIHSWASFSFS 121
PG L QR T P L TSS++ PGG + + HS S S
Sbjct: 210 PGVGTLQQPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSS 257
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 2.5
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 80 ERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDV 202
ER+ AK A+K EK+K + ++ EG G + PP E+V
Sbjct: 665 EREA-AKAATKSEAEKQKPSGKFEEGT-GGRAPPPPPAEEV 703
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 355 HRCRYTIC--FNCRLEVCDVLH 296
HR + +C FNC LE+ +VLH
Sbjct: 592 HRWLHIVCEGFNCFLELPEVLH 613
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 4.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 355 HRCRYTICFNCRLEVCDVLHHFELSTGGVDLGDRARLQLVDELAK 221
HR + C+ L+ C +L LS + L R+ LQ D+ A+
Sbjct: 180 HRFPVSECYLACLKACSILAQLFLSKETLMLSFRSLLQTKDQYAE 224
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 4.4
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Frame = +2
Query: 116 NPEKEKEAQEWIEGVL------GAKFPPG-ELFE--DVLKDGTVLCQLINKLKPGSV--- 259
N E+ +E + I VL G++ P E FE D KDG +L +LIN P ++
Sbjct: 111 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDER 170
Query: 260 ----PKINTTGGQFKMMENITNFQSAIKAYG 340
+ N FK +EN ++ KA G
Sbjct: 171 VLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.2 bits (50), Expect = 7.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 301 EHHKLPVCN*SIWCTDID 354
+HHK+P C + CT++D
Sbjct: 72 QHHKIPACL-HLTCTNVD 88
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 24.2 bits (50), Expect = 7.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 354 IDVGTPYALIADWKFVMFSIILN 286
ID+GT Y+ +A W+ II N
Sbjct: 11 IDLGTTYSCVAVWETANVEIIPN 33
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 24.2 bits (50), Expect = 7.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 362 WNTSMSVHHML*LQTGSL*CSPSF*TVHRWC*SWGQSQASAC 237
W ++++V TGS C P F + WC S G + S C
Sbjct: 1210 WTSTVTVQGT---STGSYICMPHFQIQYDWC-SAGVTDMSEC 1247
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 214 HCSLPAHQQAEAWLCPQDQHHRWTVQNDGEHHKLPV 321
H Q +LC WTVQ D EH+ + V
Sbjct: 418 HTGSTPWQGNRRYLCLNLVGFIWTVQQDAEHNTITV 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,041
Number of Sequences: 5004
Number of extensions: 35855
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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