Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G13
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 239 3e-64
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 235 5e-63
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 8e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 28 1.2
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 2.0
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 6.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 6.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 8.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.1
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 8.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 8.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 239 bits (584), Expect = 3e-64
Identities = 114/175 (65%), Positives = 135/175 (77%)
Frame = +2
Query: 62 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 241
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 242 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPXAFTNQIQAAFREPRLLIVLD 421
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTP FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 422 PAQDHQPITEASYVNIPVIALCNTXSPLXFVDXAIPCNTKSSHSIGLMWWLLARE 586
P D Q I EAS+VNIPVIALC+T S L VD AIP N K SIGL W+LLARE
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLARE 184
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 235 bits (574), Expect = 5e-63
Identities = 109/179 (60%), Positives = 137/179 (76%)
Frame = +2
Query: 50 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 229
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 230 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPXAFTNQIQAAFREPRLL 409
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTP FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 410 IVLDPAQDHQPITEASYVNIPVIALCNTXSPLXFVDXAIPCNTKSSHSIGLMWWLLARE 586
+V DP D Q I EAS+VNIPVIALC+T S L VD AIP N K SIGL+W+LLARE
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLARE 183
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 38.3 bits (85), Expect = 8e-04
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 27/190 (14%)
Frame = +2
Query: 95 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 268
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 269 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPXAFTN--QIQA------------------ 385
+ GQ+ +V+ A I R+ P TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 386 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTXSPLXFVDXAIPCNTKSSHS 553
++ P L+++L+P ++ EA ++P I + +T + V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 554 IGLMWWLLAR 583
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 185 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAH 322
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVH 134
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 448 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 269
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 268 EHISGVLDG 242
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.2
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 269 RTHQRGSRWLRQHEQPEQVFPRYDA 195
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 6.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Frame = +2
Query: 320 HTGATPIAGRFTPXAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 484
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 485 CNTXSPLXFVDXAIPCNTKSSHSI 556
C+ S F D A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 193 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 44
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 153 MSTNDVLMVPM*STCVVPGKNLFWLLVL 236
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 399 GSRNAAWIWLVKAXGVKRPAIGVAPVCAA 313
G+ +A W WL+ G A+ VA + +A
Sbjct: 92 GAPSAVWCWLIAGAGCMCIALSVAELVSA 120
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 478 CFVQHXLPTXICGXCYPMQHQVF 546
C + L + ICG YP+Q VF
Sbjct: 794 CLLIGILASMICGAAYPVQAAVF 816
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,286
Number of Sequences: 5004
Number of extensions: 53361
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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