Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G10
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 64 1e-11
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 2.6
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 26 3.4
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 7.9
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 64.5 bits (150), Expect = 1e-11
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Frame = +3
Query: 99 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 278
+V NF AGPA + V E + NF+ G+ + E SHRS + + R L +
Sbjct: 6 EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65
Query: 279 VPDNYKVXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWSAKAAXGGEKI 431
+P+N+ + N+ +++ A+Y++TGAWS KA E++
Sbjct: 66 IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125
Query: 432 WESKFGATTDR*I*RHT*S---DK-MELDPN--ASYVHICTNETIHGVEFD 566
A + + S DK ++ P+ S V+ C NET+HGVEF+
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVEFN 176
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Frame = -1
Query: 372 QYQFWILSLKEQLQIDQDPHQLKTALCSCPVHLISFAQHP------EFRHLASCMLKNDD 211
QYQFWI L + ++ + L P L SF P F +L C+ KN
Sbjct: 167 QYQFWIERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQP 226
Query: 210 L 208
+
Sbjct: 227 I 227
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 159 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 275
+N+ + +SLL S S++Y L + D+V N+L
Sbjct: 1197 RNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 159 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 293
+++ T ++ SG+ L T HR KLN + ++ +LD+ + +
Sbjct: 211 ESQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 138 EEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVV 263
E V + N + + + ++LL T H S T KLNV D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 451 LPPTDKYEDIPDQTKWNLIPMLHMY 525
LPP +EDI + TK I LH Y
Sbjct: 336 LPPLASFEDIDNLTKEQCIQYLHGY 360
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 354 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 259
L+LK+ + I + H L A+CS ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 156 IKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 299
+ EL E S LLE + R S + ++ +++L DVP K+
Sbjct: 2671 VLTELAKHEGSSELLLECAWRISDWSNNRESLEVAIKSLSDVPTPRKL 2718
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 324 QDPHQLKTALCS-CPVHLISFAQHPEFRHLASCMLKNDDLFPIN*FQNFQ 178
+DP Q K A+C C SF Q L+ C L+ D + + N+Q
Sbjct: 277 RDPGQ-KLAICQKCDFAFCSFCQATWHGDLSPCKLEGDSKKLVEMYLNYQ 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,455
Number of Sequences: 5004
Number of extensions: 42411
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -