Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G10
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...   113   8e-26
AC006714-12|AAK29719.2|  305|Caenorhabditis elegans F-box a prot...    28   4.1  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        27   9.5  
AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4 prot...    27   9.5  
AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    27   9.5  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score =  113 bits (272), Expect = 8e-26
 Identities = 60/152 (39%), Positives = 83/152 (54%)
 Frame = +3

Query: 108 NFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPD 287
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHRS  +  L  E   ++R L++VPD
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPD 68

Query: 288 NYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSAKAAXGGEKIWESKFGATTDR* 467
           N+++             +PLNL      ADY+VTGAWS+KAA    K    K      + 
Sbjct: 69  NFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYINVKKVFQPSKP 128

Query: 468 I*RHT*SDKMELDPNASYVHICTNETIHGVEF 563
                  +    D  A+Y++ C NET+HG+EF
Sbjct: 129 YVTVPDQENWVHDEKAAYLYYCANETVHGIEF 160


>AC006714-12|AAK29719.2|  305|Caenorhabditis elegans F-box a protein
           protein 63 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 463 DKYEDIPDQTKWNLIPMLHMYIFVLMKQYMV 555
           D++ED+ +  +W +   +H+Y  VL+ +++V
Sbjct: 182 DRFEDLINLEQWKIAKRMHIYDSVLISRHIV 212


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 486 SDKMELDPNASYVHICTNETIHGVEF 563
           S   ELD  + YVH+C     +GV F
Sbjct: 315 SGTSELDAKSKYVHLCRGLKTYGVTF 340


>AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical
           protein Y66A7A.4 protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 421 AKKYGKVNLVLPPTDKYEDIPDQTKWNLI 507
           +KK   + +   PT K ++ P Q  WN+I
Sbjct: 243 SKKIDYIRIAATPTMKIQEKPSQLPWNMI 271


>AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4
           protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 421 AKKYGKVNLVLPPTDKYEDIPDQTKWNLI 507
           +KK   + +   PT K ++ P Q  WN+I
Sbjct: 243 SKKIDYIRIAATPTMKIQEKPSQLPWNMI 271


>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 559 STPCIVSLVQICTYEALGSSSILSDQVCLHIYLSVVAPNLL 437
           +T    S +Q  ++ +  SSS  S+Q C  I++ ++  N L
Sbjct: 272 NTSTFTSWLQSSSFSSASSSSTSSEQCCTFIFIYLLCQNFL 312


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 486 SDKMELDPNASYVHICTNETIHGVEF 563
           S   ELD  + YVH+C     +GV F
Sbjct: 315 SGTSELDAKSKYVHLCRGLKTYGVTF 340


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 486 SDKMELDPNASYVHICTNETIHGVEF 563
           S   ELD  + YVH+C     +GV F
Sbjct: 315 SGTSELDAKSKYVHLCRGLKTYGVTF 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,009
Number of Sequences: 27780
Number of extensions: 236155
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)