Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G06
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    58   3e-10
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    56   1e-09
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    23   8.6  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   8.6  

>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 58.0 bits (134), Expect = 3e-10
 Identities = 30/50 (60%), Positives = 35/50 (70%)
 Frame = +3

Query: 123 RGGKTPNRSK*RRTL*NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGL 272
           RG  T  R K  +    VKFK+RCSR+LYTLV+ D +KAEKL QSLPP L
Sbjct: 17  RGDATSARVKKNQNK-AVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPAL 65



 Score = 29.1 bits (62), Expect = 0.17
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKN 163
           ++ DIK FL  A R DA S ++KKN
Sbjct: 4   QVTDIKLFLQLAHRGDATSARVKKN 28


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +3

Query: 171 NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGL 272
           +VKFK+RCS++LYTLV+ D +KAEKL QSLPP L
Sbjct: 32  DVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDL 65



 Score = 36.7 bits (81), Expect = 9e-04
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKN 163
           +I DIK FL  ARRKDA S +IKKN
Sbjct: 4   QISDIKQFLEIARRKDATSARIKKN 28


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 175 SSSRFDAQGSCTPWSSLTKRRLRNLXRVYLQVSKLKK*SDVTRLK 309
           S S +      TP SS       N   +YL ++ LKK   V RL+
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLR 203


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 56  LKTIQSSTCRVEIKDIKDFLIXARRKDAKSVKIKKNPVEC 175
           LK+  SSTC    +   +FL+   R +  S++ +K    C
Sbjct: 112 LKSESSSTCGYLARQAHNFLLQCFRSNVSSLRGQKVHEHC 151


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 2   TFFNLXQDVSFGPI*QCWLKTIQSSTCRVE 91
           TFF++  ++S G I + WL+ I +    +E
Sbjct: 405 TFFDVPTNMSSGDISEIWLQHIFAHNTSIE 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,717
Number of Sequences: 5004
Number of extensions: 17565
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)