Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G06
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     58   2e-09
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    58   2e-09
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     58   2e-09
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626...    29   0.84 
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    28   1.9  

>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 30/56 (53%), Positives = 36/56 (64%)
 Frame = +3

Query: 105 KTF*LXRGGKTPNRSK*RRTL*NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGL 272
           K F L    K     + +RT   VKFKVRCS++LYTL + D +KA KL QSLPPGL
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGL 64



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKK 160
           +I +IKDFL+ ARRKDA+SV+IK+
Sbjct: 4   QIHEIKDFLLTARRKDARSVRIKR 27


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 30/56 (53%), Positives = 36/56 (64%)
 Frame = +3

Query: 105 KTF*LXRGGKTPNRSK*RRTL*NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGL 272
           K F L    K     + +RT   VKFKVRCS++LYTL + D +KA KL QSLPPGL
Sbjct: 39  KDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGL 94



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/24 (66%), Positives = 22/24 (91%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKK 160
           +I +IKDFL+ ARRKDA+SV+IK+
Sbjct: 34  QIHEIKDFLLTARRKDARSVRIKR 57


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/56 (53%), Positives = 36/56 (64%)
 Frame = +3

Query: 105 KTF*LXRGGKTPNRSK*RRTL*NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGL 272
           K F L    K     + +R+   VKFKVRCSR+LYTL + D +KA KL QSLPPGL
Sbjct: 9   KDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGL 64



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/25 (64%), Positives = 23/25 (92%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKN 163
           +I +IKDFL+ ARRKDA+SV+IK++
Sbjct: 4   QIHEIKDFLLTARRKDARSVRIKRS 28


>05_05_0125 -
           22561972-22562028,22562318-22562416,22562496-22562624,
           22563312-22563355,22563570-22563642,22563791-22563877,
           22563985-22564069,22565460-22565533,22565612-22566192,
           22566275-22568270
          Length = 1074

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 43  LTVLVENYSVFNMPR*NQRYQRLFN*XEEERRQIGQNKEEPCRMSSSRFD 192
           LT  VE+  V  +   ++ YQ L N   +E   I +NK E CR  SS+++
Sbjct: 286 LTNEVESLVVPELGNNDEDYQALIN--VDEVHDISENKNEGCRPPSSQYE 333



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 43  LTVLVENYSVFNMPR*NQRYQRLFN*XEEERRQIGQNKEEPCRMSSSR 186
           LT  VE+  V      ++ YQ L N   +E   I +NK E CR  SS+
Sbjct: 386 LTNEVESLVVLESGNNDEDYQALIN--VDEVHDISENKNEGCRPPSSQ 431


>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 23/80 (28%), Positives = 41/80 (51%)
 Frame = +3

Query: 21  RMFLLDPFDSAG*KLFSLQHAALKSKISKTF*LXRGGKTPNRSK*RRTL*NVKFKVRCSR 200
           R++LLD FD+AG    S +H+   S   K + + R  KT N  + +++   +K K    R
Sbjct: 161 RLYLLDKFDNAGAGACSRRHSD-PSYFKKAWDMMRADKTGNFQREKKSQ-KIKRKGSRLR 218

Query: 201 FLYTLVITDKEKAEKLXQSL 260
             Y    T +++  +L ++L
Sbjct: 219 EPYHGQTTPRQRNGELQRAL 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,875,882
Number of Sequences: 37544
Number of extensions: 100544
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)