Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G06
         (323 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p pro...    66   7e-12
AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA ...    66   7e-12
AJ318090-1|CAC41645.1|  672|Drosophila melanogaster nuclear RNA ...    29   1.4  
AJ251947-1|CAB64382.2|  672|Drosophila melanogaster tip associat...    29   1.4  
AE014298-1507|AAF47959.3|  672|Drosophila melanogaster CG1664-PA...    29   1.4  
AE014297-410|AAF51911.2|  263|Drosophila melanogaster CG31562-PA...    28   3.2  
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P...    27   5.6  

>AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p
           protein.
          Length = 70

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = +3

Query: 171 NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGLQ 275
           N KFK+RCSRFLYTLV+ DKEKA+K+ QSLPPGLQ
Sbjct: 31  NTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQ 65



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKNP 166
           EIK++KDFL  ARR DA++VKIKKNP
Sbjct: 4   EIKEVKDFLNKARRSDARAVKIKKNP 29


>AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA
           protein.
          Length = 70

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = +3

Query: 171 NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGLQ 275
           N KFK+RCSRFLYTLV+ DKEKA+K+ QSLPPGLQ
Sbjct: 31  NTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQ 65



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKNP 166
           EIK++KDFL  ARR DA++VKIKKNP
Sbjct: 4   EIKEVKDFLNKARRSDARAVKIKKNP 29


>AJ318090-1|CAC41645.1|  672|Drosophila melanogaster nuclear RNA
           export factor 1 (NXF1) protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 65  IQSSTCRVEIKDIKDFLIXARRKDAKSVKIKKNPVECQV 181
           ++++ CR   KD + F+   RRK  K VK+    +E Q+
Sbjct: 311 LKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQI 349


>AJ251947-1|CAB64382.2|  672|Drosophila melanogaster tip associating
           protein protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 65  IQSSTCRVEIKDIKDFLIXARRKDAKSVKIKKNPVECQV 181
           ++++ CR   KD + F+   RRK  K VK+    +E Q+
Sbjct: 311 LKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQI 349


>AE014298-1507|AAF47959.3|  672|Drosophila melanogaster CG1664-PA
           protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 65  IQSSTCRVEIKDIKDFLIXARRKDAKSVKIKKNPVECQV 181
           ++++ CR   KD + F+   RRK  K VK+    +E Q+
Sbjct: 311 LKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQI 349


>AE014297-410|AAF51911.2|  263|Drosophila melanogaster CG31562-PA
           protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 223 VMTRVYRNLEHRTLNLTFYRVLLYFDRFGVFPPRXN*KVFDIFDFN 86
           VMTR+Y + EH     + Y      D + +F P+ + K+F    FN
Sbjct: 45  VMTRIYVDFEHGDGKSSLYLYNRELDMYDIFLPKMS-KIFQEAAFN 89


>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
            protein.
          Length = 1833

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 59   KTIQSSTCRVEIKDIKDFLIXARRKDAKSVKIKKNPVECQVQGSM 193
            K+ + S   +E K+IKD    A + D+K V+  K  VE +VQ S+
Sbjct: 1063 KSAEKSKSSLE-KEIKDLKTKASKSDSKQVQDLKKQVE-EVQASL 1105


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,734,231
Number of Sequences: 53049
Number of extensions: 176036
Number of successful extensions: 400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 695070486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)