Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G06
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    62   7e-11
Z77658-7|CAB01154.1|  254|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    27   3.1  
AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +3

Query: 171 NVKFKVRCSRFLYTLVITDKEKAEKLXQSLPPGLQ 275
           N KFKVRC+ +LYTLV+ DK+KAEKL QSLPPG+Q
Sbjct: 31  NTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQ 65



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKN 163
           EIK+IKDFL+ ARRKDAKSVKIKKN
Sbjct: 4   EIKEIKDFLVKARRKDAKSVKIKKN 28


>Z77658-7|CAB01154.1|  254|Caenorhabditis elegans Hypothetical
           protein F14D7.8 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 223 VMTRVYRNLEHR---TLNLTFYRVLLYFDRFGVFP 128
           V+  VY N E     + N+ ++ VLLYF  F VFP
Sbjct: 54  VLFGVYNNTERSLRWSANIVYFYVLLYFAIFLVFP 88


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 311 FFNLVTSLYFFNLETW 264
           FF++V + YFFNL TW
Sbjct: 40  FFHIVIADYFFNLLTW 55


>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 89  EIKDIKDFLIXARRKDAKSVKIKKNPVECQVQ 184
           ++  I++FL+  + ++AK + I K  ++C V+
Sbjct: 231 DVWSIEEFLVMEQWRNAKELTIIKRVIKCDVE 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,203,028
Number of Sequences: 27780
Number of extensions: 98295
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)