Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G05
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 39 0.004
03_02_0484 + 8805053-8805538 39 0.004
03_02_0483 - 8804021-8804485 39 0.004
04_04_0017 + 22176759-22177406 38 0.007
03_02_0478 + 8775892-8776377 37 0.012
02_02_0077 - 6586638-6587165 37 0.012
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.037
01_01_0229 - 1943473-1943922 35 0.048
01_01_0231 + 1951047-1951499 35 0.064
11_02_0041 - 7669692-7670312 34 0.11
02_05_0494 + 29486960-29487454 33 0.15
01_01_0227 + 1933247-1933699 33 0.26
01_01_0599 - 4448290-4448790 31 0.60
01_01_0228 + 1940149-1940649 29 3.2
09_02_0300 - 7073153-7073589,7074058-7074169 28 7.4
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604... 27 9.7
06_03_1296 - 29104857-29105870 27 9.7
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 27 9.7
>03_02_0485 - 8808139-8808618
Length = 159
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
S +F+RR+ LPE PE +++ + +GVLT+T P++ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>04_04_0017 + 22176759-22177406
Length = 215
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVXIAQTG---PVRKEI 596
+F R+ LP+ A +++ + L + GVLT+ + PD +KG R V IA G +K I
Sbjct: 141 RFWRQLRLPDNADLDSIAASLDN-GVLTVRFRKLAPDQIKGPRVVGIASAGGDDGGKKSI 199
Query: 597 KDQSEXANEKEK 632
E N++ K
Sbjct: 200 GGAGEGQNQQAK 211
>03_02_0478 + 8775892-8776377
Length = 161
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 527
S +F+RR+ LP+ A PE +++ + +GVLT+T P++
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>02_02_0077 - 6586638-6587165
Length = 175
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVXIAQTG 578
+F+RR+ LPE A + V + DGVLT+T +K P K R V + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 524
S QF+RR+ LPE A + V++ L +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 524
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 524
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVP 533
+F RR+ +P GA V +RL DGVLT+T P KVP
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVP-KVP 174
>02_05_0494 + 29486960-29487454
Length = 164
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 423 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 527
R V ++ LPE AA + +R++ DGVLT+T P++
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 420 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRK 527
S +F RR+ LP GA + V + + +GVLT+T P++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>01_01_0599 - 4448290-4448790
Length = 166
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 426 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVXI 566
+F+R++ LP+ A + + S + DGVLT+T + P K + + +
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163
>01_01_0228 + 1940149-1940649
Length = 166
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 429 FVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVXIAQT 575
+V R LP G E V + VL IT R V KG+R I ++
Sbjct: 52 YVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERS 100
>09_02_0300 - 7073153-7073589,7074058-7074169
Length = 182
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 477 ESRLSSDGVLTITAPRKVPDAVKGERKVXIAQTGPVRKEIKDQ 605
E+ LSS+ + TAPR +P ++G+ V I + VR +K Q
Sbjct: 141 EAELSSEVIRINTAPRVIPCHLEGD-NVGILYSPTVRANLKGQ 182
>11_06_0141 +
20559828-20559986,20560074-20560281,20560375-20560433,
20560532-20560590,20560809-20560886,20560974-20561073,
20561174-20561245,20561327-20561434,20561677-20561730,
20562847-20563296
Length = 448
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 ALPEGAAPETVESRLSSDGVLTITAPRKVPDAV 542
A P A+PET ES ++ L T P K+ D V
Sbjct: 151 APPNDASPETQESNENTTNALEQTLPEKMEDDV 183
>06_03_1296 - 29104857-29105870
Length = 337
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 7 ISDPQVRIQTYKVISKRFSGVIFNKKQECRCYHISSMILALDALAVCWTSILALP 171
ISDP++ YKV S V+ KQ C IL+ + W ++ + P
Sbjct: 142 ISDPEMSEAMYKVQSALIVDVVLLGKQAV-CVDFHGQILSFSITDMIWRTVSSCP 195
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 571 CAMXTFLSPLTASGTFLGAVMVSTPSDDSRDSTVSGAAPS 452
CA+ S L ++GT LG V S D++D T S P+
Sbjct: 7 CAVLLLASVLGSTGTDLGPSPVVANSPDAQDQTSSPPEPT 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,222
Number of Sequences: 37544
Number of extensions: 308951
Number of successful extensions: 775
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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