Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_G04
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    85   3e-18
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   0.93 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   3.8  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    24   6.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   8.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 84.6 bits (200), Expect = 3e-18
 Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
 Frame = +2

Query: 38  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 211
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 212 MPKLKXFQKIQIRLVRELEKKFSGKHVVF 298
            P LK F K Q RL RELEKKF+ +HV+F
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIF 94


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 200 IYVPMPKLKXFQKIQIRLVRELEKKFSGKHV 292
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 14  RKVVKMSTKIIK-ASGAEADSFETSISQALVELETN 118
           R+  K   K I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 22  RRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 41  IIKASGAEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKEIEL 178
           I+  SG +     T  S    EL  +  S +K  L + Y+T A+++EL
Sbjct: 27  ILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVEL 74


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 126  SKPNFGSFTLQKLKKLNYTIRS 191
            S P FGSFT + L  LN   R+
Sbjct: 1038 STPEFGSFTYRNLDFLNKANRN 1059


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 177  SSISLAFVM*SSRSWALRSELVSSSTSACEIEVSKESASAPLAL 46
            SSI+ A V  SS S    + +  SSTS+     + +S+++ +A+
Sbjct: 1002 SSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAV 1045


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,119,561
Number of Sequences: 5004
Number of extensions: 18089
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)