Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_G04
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 87 2e-18
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 73 5e-14
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 48 1e-06
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 28 1.4
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 28 1.4
03_02_0488 - 8824980-8825267,8825364-8827775 28 1.4
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 1.4
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 27 2.5
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 3.3
10_08_0058 + 14521922-14522779 26 5.7
06_02_0105 - 11893666-11895483,11895661-11896422 26 5.7
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 26 5.7
06_03_0407 + 20476147-20476187,20476784-20477036 26 7.6
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 26 7.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 87.4 bits (207), Expect = 2e-18
Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Frame = +2
Query: 38 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 211
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 212 MPKLKXFQKIQIRLVRELEKKFSGKHVV 295
K F+KI +RLVRELEKKFSGK VV
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVV 94
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 72.9 bits (171), Expect = 5e-14
Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Frame = +2
Query: 92 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKXFQKIQIRLVREL 265
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP K ++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 266 EKKFSGKHVV 295
EKKFSGK VV
Sbjct: 98 EKKFSGKDVV 107
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +2
Query: 146 LYITKAKEIELHNKKSIIIYVPMPKLKXFQKIQIRLVRELEKKFSGKHVVF 298
+Y+ ++ N K ++I+V K F+KI +RLV+ELEKKFSGK VVF
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVF 80
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 98 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKXF 232
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 98 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKXF 232
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 47 KASGAEADSFETSISQALVELETNSDL 127
++SG + FET +S A++E+E N+ L
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 23 VKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 202
V++ + ++ S E +SF S+ + + + D L + Y KEI N+ ++ +
Sbjct: 528 VRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDM 584
Query: 203 YVPMPKLKXFQKIQIRL---VRELEKKFSGKHV 292
+ +L F +++ L V EL+K+ + V
Sbjct: 585 EMANDRLNDFNLVRLNLENTVCELKKEVTSLEV 617
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 98 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKXF 232
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 95 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 205
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
>10_08_0058 + 14521922-14522779
Length = 285
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 105 NSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRC 215
+S TPT+ P FT+ L +L S SS C C
Sbjct: 18 SSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSSCTC 54
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 2 CFPSRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 181
C + + T++IK A A + + ++ +++ LREL +AKE E
Sbjct: 532 CALNVAAASLKTELIKEKTALATMKQMEATSSIAAASLRVEIQLALRELEAVQAKEKESR 591
Query: 182 N 184
N
Sbjct: 592 N 592
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 38 KIIKASGAEADSFET--SISQALVELETNSDLKAQLRELYITKAKEIELHN 184
K +K + E D E ISQAL L + S + + +E KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615
>06_03_0407 + 20476147-20476187,20476784-20477036
Length = 97
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 121 GVGFEFDQRLRDRGLEGIRLSTARFDDLRTHLDNFTG 11
G G E D+ + RG+EG+ + R LR + TG
Sbjct: 19 GHGLECDKVWQQRGIEGVTAAGDRRRYLRVRREEITG 55
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 55 RC*GGFLRDLDLAGAGRTR-NQLRPQSPTSG 144
RC GG + +DLAG RTR +L P+ G
Sbjct: 75 RCSGGRVVSVDLAGLRRTRLGRLAPRFAVDG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,216,108
Number of Sequences: 37544
Number of extensions: 118273
Number of successful extensions: 325
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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