Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F21
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 200 1e-52
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.097
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.17
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.1
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.8
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.7
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.8
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.5
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 8.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 8.5
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.5
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 200 bits (488), Expect = 1e-52
Identities = 97/183 (53%), Positives = 133/183 (72%), Gaps = 2/183 (1%)
Frame = +3
Query: 6 IKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 179
+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP P
Sbjct: 8 VKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQP 67
Query: 180 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 359
LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++
Sbjct: 68 LLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHN 125
Query: 360 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTF 539
AILED+VFP EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ VTF
Sbjct: 126 AILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTF 185
Query: 540 EFP 548
EFP
Sbjct: 186 EFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.097
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 336 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 512
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 513 KLTGREVTFEFP 548
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.17
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 249 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 428
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 429 SQLIKVHLD-KNQQTTIEHKV 488
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 292 LGLGRILRSPTKTTCLPLNFFSSSRTS 212
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 162 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 254
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 320 KEATLKDIDLCVRCYPRGLGLPC 388
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 489 DTFQSVYKKLTGREVTFEFPNLICKPSL*LYNKHKNL 599
D F+ VYKKLT E F N KPS+ N ++
Sbjct: 69 DNFRDVYKKLTENE-DDSFANQAEKPSMEQQNSKNSI 104
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 338 P*AWPLLFVSNTSFVAGLRQDLTVSN 261
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 501 SVYKKLTGREVTFEFPNLICKPSL*LYNKHKN 596
S+YK +TG+ ++ +F + I K + L +HKN
Sbjct: 518 SIYKLVTGKNLSLDFASQILKEASIL--EHKN 547
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 282 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 407
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 469 VCWFLSKCTLMSCEPSNLTLMR 404
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,606
Number of Sequences: 5004
Number of extensions: 47101
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -