Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F21
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   233   9e-62
U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    29   1.9  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    29   3.3  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    29   3.3  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  233 bits (569), Expect = 9e-62
 Identities = 108/185 (58%), Positives = 144/185 (77%), Gaps = 1/185 (0%)
 Frame = +3

Query: 6   IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 185
           +K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+L
Sbjct: 9   LKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQL 68

Query: 186 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDA 362
           KAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA
Sbjct: 69  KAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDA 128

Query: 363 ILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFE 542
            L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VTFE
Sbjct: 129 WLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFE 188

Query: 543 FPNLI 557
           FP+ I
Sbjct: 189 FPDPI 193


>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
 Frame = -3

Query: 556 IRFGNSKVTSRPVSFLYTDWKVSTLCSIVV-CWFLSKCTLMSCEPSNLTLMRLPTISAGK 380
           +RF N K ++  V+F+Y   KV+ L ++++    L+K  L      N       TI  G 
Sbjct: 204 LRFLNIKYSAYYVTFIYFVAKVAFLLNVILQSKLLNKYMLPHDRQQNFGFDMWKTIFYGS 263

Query: 379 TKSSRIASYTEVNVLERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLIW- 203
           T  +   ++ E  V  R   C   TR     +G + +  T    L LN F+      +W 
Sbjct: 264 TNGNE--TWRENGVFPRVTLCDFETR----DMGNV-QMHTVQCVLLLNLFTEKIFVFLWA 316

Query: 202 --IF*KAFSLG 176
             I   AF++G
Sbjct: 317 WYILLTAFTVG 327


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 414 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPNL 554
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F +L
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNFLSL 425


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 414 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPNL 554
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F +L
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNFLSL 438


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 64  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 174
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,870
Number of Sequences: 27780
Number of extensions: 268004
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)