Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F19
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 228 6e-61
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 228 6e-61
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.57
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 29 0.76
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.1
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 3.1
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 3.1
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 3.1
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 3.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.1
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 7.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.1
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 228 bits (557), Expect = 6e-61
Identities = 101/124 (81%), Positives = 111/124 (89%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 399 KPXG 410
KP G
Sbjct: 121 KPNG 124
Score = 89.8 bits (213), Expect = 3e-19
Identities = 40/74 (54%), Positives = 53/74 (71%)
Frame = +1
Query: 415 VXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDXLR 594
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ R
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 595 EXGRLANDGCIVQY 636
G + DGC ++
Sbjct: 186 SRGEIIPDGCYAKF 199
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 228 bits (557), Expect = 6e-61
Identities = 101/124 (81%), Positives = 111/124 (89%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 399 KPXG 410
KP G
Sbjct: 121 KPNG 124
Score = 89.4 bits (212), Expect = 4e-19
Identities = 40/74 (54%), Positives = 53/74 (71%)
Frame = +1
Query: 415 VXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDXLR 594
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ R
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 595 EXGRLANDGCIVQY 636
G + DGC ++
Sbjct: 186 SRGEIIPDGCYAKF 199
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 63 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 239
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 240 G 242
G
Sbjct: 94 G 94
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 494 CAVPSSSSPDVKRSTYQRSGVSQSMNVMSLTXCVXRAAS 610
C + + SP+++RS Y +G++ S + +T RAA+
Sbjct: 31 CVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 120 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 239
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 152 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPHGDLYKVTPQ 12
L Q++++ L + T T P +R V SC+P H + P+
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKHDSTSRKKPK 454
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEAALFTQXVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+A F + + FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEAALFTQXVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+A F + + FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEAALFTQXVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+A F + + FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEAALFTQXVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+A F + + FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 154 RERPLTTFHCACTWCPTNMNS 216
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 141 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 284
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 239 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 123
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 482 SSRLCAVPSSSSPDVKRSTYQRSGVS 559
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 282 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 386
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -2
Query: 255 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 100
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 99 SISDTVYFCSTGSIL 55
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 106 VGVYLIPRSVSSIWV 150
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,904
Number of Sequences: 5004
Number of extensions: 59357
Number of successful extensions: 187
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -