Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F19
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 227 8e-60
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 215 3e-56
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 204 4e-53
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.78
07_03_1509 - 27246721-27247350 29 3.2
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 7.3
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 9.7
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 9.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 227 bits (554), Expect = 8e-60
Identities = 99/126 (78%), Positives = 110/126 (87%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 399 KPXGYC 416
KP G C
Sbjct: 121 KPQGTC 126
Score = 82.2 bits (194), Expect = 3e-16
Identities = 40/74 (54%), Positives = 50/74 (67%)
Frame = +1
Query: 412 TVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDXL 591
T RV IGQ ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ L
Sbjct: 125 TCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKL 184
Query: 592 REXGRLANDGCIVQ 633
+ GR+ +DG Q
Sbjct: 185 KAEGRIMSDGVNAQ 198
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 215 bits (524), Expect = 3e-56
Identities = 93/122 (76%), Positives = 105/122 (86%)
Frame = +3
Query: 51 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 230
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 231 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXG 410
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 411 YC 416
C
Sbjct: 432 TC 433
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/70 (57%), Positives = 50/70 (71%)
Frame = +1
Query: 412 TVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDXL 591
T RVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ L
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKL 491
Query: 592 REXGRLANDG 621
+ GR+ DG
Sbjct: 492 KSEGRIVPDG 501
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 204 bits (499), Expect = 4e-53
Identities = 89/119 (74%), Positives = 102/119 (85%)
Frame = +3
Query: 60 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 239
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 240 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGYC 416
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP G C
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTC 122
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/70 (57%), Positives = 47/70 (67%)
Frame = +1
Query: 412 TVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDXL 591
T RV IGQ ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ L
Sbjct: 121 TCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRL 180
Query: 592 REXGRLANDG 621
+ GR+ DG
Sbjct: 181 KSEGRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 162 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 281
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 431 LDSPSCPCALXTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 559
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 31 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 201
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 268 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 167
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 180 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 64
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,921,843
Number of Sequences: 37544
Number of extensions: 454337
Number of successful extensions: 1183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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