Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F18
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    63   9e-12
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    62   1e-11
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.8  

>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 63.3 bits (147), Expect = 9e-12
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +1

Query: 112 VKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 225
           VKFK+RCSR+LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 33  VKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEV 70


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 27/40 (67%), Positives = 35/40 (87%)
 Frame = +1

Query: 106 ENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 225
           ++VKFK+RCS++LYTLV+ D +KAEKL+QSLPP L V EV
Sbjct: 31  KDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEV 70


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 113 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 244
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,915
Number of Sequences: 5004
Number of extensions: 11320
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)