Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F18
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    73   4e-14
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   0.73 
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   6.8  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   6.8  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = +1

Query: 109 NVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 228
           N KFKVRC+ +LYTLV+ DK+KAEKLKQSLPPG+QVKE+K
Sbjct: 31  NTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 68  GKXPNRSK*RXTLRMSSSRFDAQGSCTPWSSLTKRRLRN 184
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 YTLVITDKEKAEKLKQSLPPGLQVKEVK 228
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 YTLVITDKEKAEKLKQSLPPGLQVKEVK 228
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,389,588
Number of Sequences: 27780
Number of extensions: 60781
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)