Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F13
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 106 2e-24
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 106 2e-24
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 31 0.10
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 1.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.2
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 5.2
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 9.0
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.0
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 106 bits (255), Expect = 2e-24
Identities = 46/78 (58%), Positives = 60/78 (76%)
Frame = +3
Query: 285 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 464
RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHGR+ Y+S
Sbjct: 82 RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141
Query: 465 SPCHIEVCLXEREDAVAR 518
SP HIE+ + E E+AV +
Sbjct: 142 SPSHIEIIVAEEEEAVPK 159
Score = 73.7 bits (173), Expect = 1e-14
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +2
Query: 113 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 280
HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25 HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 106 bits (254), Expect = 2e-24
Identities = 46/78 (58%), Positives = 59/78 (75%)
Frame = +3
Query: 285 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 464
RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRAHGR+ Y+S
Sbjct: 82 RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141
Query: 465 SPCHIEVCLXEREDAVAR 518
SP HIE+ + E E+AV +
Sbjct: 142 SPSHIEIIVAEEEEAVPK 159
Score = 73.3 bits (172), Expect = 2e-14
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +2
Query: 113 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 280
HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25 HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.1 bits (67), Expect = 0.10
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 255 KQSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 434
K S +QH+ PK SA LL +LR+ N TL++ + D I C +R+ R
Sbjct: 151 KLGSTSQHQIATPKSSAS-LLNILRSLHDEQKN-TLNISSVKQDRITEANPTCEKRKPSR 208
Query: 435 A 437
+
Sbjct: 209 S 209
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 273 QHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI 383
+H WP EF+ + +++AE N+ + D +L+I
Sbjct: 4 EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 278 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 195
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -3
Query: 357 FCCQRLIQRSSITARGI------RRISWASXPCVVPNCFA*AQRPTPPLKRRNGIHSFFS 196
FC LI S A+ + R ++ + ++PN A R PP K++N I + F
Sbjct: 122 FCIWSLISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFG 181
Query: 195 IT 190
T
Sbjct: 182 AT 183
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 365 RGQASHRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPH 478
+ Q+ S K RA +T + ++S HQ +H +S PH
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPH 371
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 248 CAQAKQFGTTQGSLAQEIRRI--PLAVIEER*IKR*QQNFGRGQASHRPHSGKSRALPTQ 421
C ++ G T S++ + I P A ++ R ++FG S G L +
Sbjct: 472 CRLMEEVGMTSKSISPSLSGISAPSASVDSS-ASRLARDFGSLSLSSNSLLGSLGGLEST 530
Query: 422 TYIPCSRSHQPLHVVSLP 475
P SH PL SLP
Sbjct: 531 PAYPSYPSHIPLGTASLP 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,070
Number of Sequences: 5004
Number of extensions: 39775
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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