Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F13
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   127   4e-30
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   109   2e-24
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  127 bits (307), Expect = 4e-30
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +3

Query: 285 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 464
           RWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMS
Sbjct: 84  RWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMS 143

Query: 465 SPCHIEVCLXEREDAVAR 518
           SPCHIEV L E+ED V++
Sbjct: 144 SPCHIEVILAEKEDVVSK 161



 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +2

Query: 110 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 283
           VHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 49  YSREPDNPAKSCKARGSNLR 108
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  109 bits (261), Expect = 2e-24
 Identities = 51/68 (75%), Positives = 57/68 (83%)
 Frame = +3

Query: 315 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLX 494
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L 
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 495 EREDAVAR 518
           E+ED V++
Sbjct: 126 EKEDVVSK 133



 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +2

Query: 110 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 229
           VHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 49  YSREPDNPAKSCKARGSNLR 108
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 477 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 349
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +3

Query: 288 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 449
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 450 NPYMSSPCHIE 482
           NP+  SPC ++
Sbjct: 548 NPH--SPCMVD 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,238
Number of Sequences: 27780
Number of extensions: 241590
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)