Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F12
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    28   0.69 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   2.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   3.7  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   4.8  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   4.8  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    25   6.4  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   6.4  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   8.4  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 158 TVRWVKTNKYGGVETAILRTAPGPVCWPIIGSLH 259
           T+ W K NKYG +    + +  G VCW  +GS +
Sbjct: 444 TLFWKKMNKYGMIIGCPMGSITGVVCW--VGSCY 475


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 FALAVYKLLRRKTVRWVKTNKYGGVET 202
           FALA Y L  R T+R ++T++ G + T
Sbjct: 185 FALAFYNLPFRSTIRDLRTDRIGRLTT 211


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 200 TAILRTAPGPVCWPIIGSLHLLGGHESPFQAFTELSKKYGD 322
           T++   A G  C   + S  LL  H+SP   F  +SK  GD
Sbjct: 244 TSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGD 284


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 214 DRTGARLLAHYRESTPSGRP 273
           D   AR +AH +ESTP  +P
Sbjct: 235 DEKIARFIAHLKESTPDKKP 254


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 182 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 277
           KY GV    L    G   WP+   + L+GGHE
Sbjct: 41  KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 49  WFCLLIKILYPNISMSSL 102
           W C  +K+LYP IS   L
Sbjct: 37  WICKELKLLYPEISKHGL 54


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 239 PIIGSLHLLGGHESPFQAFTELSKKYGDIFS 331
           P +GS    G    P+  F E   KYGD+F+
Sbjct: 41  PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 248 GSLHLLGGHESPFQAFTELSKKYGDI 325
           G L+ L  H S F    ++ KKYG+I
Sbjct: 179 GDLNDLSMHSSMFGFLAKIEKKYGNI 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,699
Number of Sequences: 5004
Number of extensions: 40047
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)