Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F09
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 210 8e-55
11_01_0155 - 1287003-1287452 210 8e-55
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 36 0.030
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.6
07_03_0227 - 15398371-15398925 29 2.6
11_01_0523 - 4109070-4109984,4110532-4110936 28 6.0
07_01_0008 - 56178-57095 28 6.0
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.0
12_01_0601 - 4907397-4907685,4908592-4909100 27 7.9
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 27 7.9
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 27 7.9
02_05_0156 + 26341904-26342801,26343469-26344148 27 7.9
>12_01_0152 - 1168928-1169377
Length = 149
Score = 210 bits (512), Expect = 8e-55
Identities = 94/146 (64%), Positives = 119/146 (81%)
Frame = +3
Query: 33 AAXRAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGK 212
A R P VQ FGRK+TA AV+ CK G G+++VNG P++L+ P +L+ K EPILL G+
Sbjct: 4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGR 63
Query: 213 EKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 392
+F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LL
Sbjct: 64 SRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123
Query: 393 VADPRRCEPKKFGGPGARARYQKSYR 470
VADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 124 VADPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 210 bits (512), Expect = 8e-55
Identities = 94/146 (64%), Positives = 119/146 (81%)
Frame = +3
Query: 33 AAXRAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGK 212
A R P VQ FGRK+TA AV+ CK G G+++VNG P++L+ P +L+ K EPILL G+
Sbjct: 4 ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGR 63
Query: 213 EKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 392
+F +D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LL
Sbjct: 64 SRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123
Query: 393 VADPRRCEPKKFGGPGARARYQKSYR 470
VADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 124 VADPRRCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 35.5 bits (78), Expect = 0.030
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +3
Query: 72 GRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 251
G+++ + A + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 252 GGGHVAQVYAIRQAISKAL 308
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 166 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 264
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 192 VPEVCTAAVWAQPSPMDARLHAAFHDHACXTQLRWRFAYXRXLGRPG 52
+P +C A W P+ A H FH R R++Y +G G
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSYRCGIGGGG 69
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 252 GGGHVAQVYAIRQAISKALIAFY 320
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>07_01_0008 - 56178-57095
Length = 305
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 177 TAAVWAQPSPMDARLHAAFHDHACXTQLRWRF-AYXRXLGRPGWA-HGLPPAQQAILTEK 4
TAA PS ARLH+ H +A L+ R A R P + H LPP+ +L K
Sbjct: 119 TAASHLAPSSAPARLHSWIHYNATSATLQLRLSATSRRPALPLLSLHPLPPSALLLLRTK 178
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 135 NGRPLDLVEPRLLQYKLQEPILLL 206
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>12_01_0601 - 4907397-4907685,4908592-4909100
Length = 265
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 18 WLAVQAAXRAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPI 197
W A AA A G A A CK ML+ P DL++ ++ + +P+
Sbjct: 90 WDAAAAAEVCKKAAAVGGGCWDAAAASEVCKAADVMLKEVAAPADLIKEGAVEDEADQPL 149
Query: 198 LLL 206
+L+
Sbjct: 150 ILI 152
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 326 FLIEGNQGL*NSLSDSVNLCYMTTTLDCHSDV 231
+LIEGN L N L D VN+ TT + + V
Sbjct: 332 YLIEGNMQLPNQLGDIVNVTDATTRRNLQNSV 363
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 56 GRPSXRX*ANRHRSCVLQAWSWNAACKRASI 148
GR S A HR C W W+A KR +
Sbjct: 86 GRSSGFQVAPTHRPCTKGLWMWSAPLKRTGL 116
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 489 WFR*RLNGKISGIWHGH 439
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,687
Number of Sequences: 37544
Number of extensions: 326305
Number of successful extensions: 879
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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