Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F09
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 257 2e-68
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 257 2e-68
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 257 2e-68
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 257 2e-68
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 134 2e-31
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 111 2e-24
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 53 8e-07
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 53 8e-07
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 2.8
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 2.8
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ... 31 2.8
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ... 31 2.8
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 2.8
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 2.8
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophil... 31 2.8
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 2.8
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 2.8
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 2.8
AL365410-1|CAB96954.1| 198|Homo sapiens hypothetical protein pr... 30 4.9
M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation fa... 30 6.5
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.5
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.5
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.5
AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein. 30 6.5
AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens ... 29 8.6
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 257 bits (629), Expect = 2e-68
Identities = 116/143 (81%), Positives = 136/143 (95%)
Frame = +3
Query: 42 RAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
+ P+Q+VQVFGRK+TATAVA CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 222 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 402 PRRCEPKKFGGPGARARYQKSYR 470
PRRCE KKFGGPGARARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 257 bits (629), Expect = 2e-68
Identities = 116/143 (81%), Positives = 136/143 (95%)
Frame = +3
Query: 42 RAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
+ P+Q+VQVFGRK+TATAVA CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 222 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 402 PRRCEPKKFGGPGARARYQKSYR 470
PRRCE KKFGGPGARARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 257 bits (629), Expect = 2e-68
Identities = 116/143 (81%), Positives = 136/143 (95%)
Frame = +3
Query: 42 RAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
+ P+Q+VQVFGRK+TATAVA CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 222 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 402 PRRCEPKKFGGPGARARYQKSYR 470
PRRCE KKFGGPGARARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 257 bits (629), Expect = 2e-68
Identities = 116/143 (81%), Positives = 136/143 (95%)
Frame = +3
Query: 42 RAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
+ P+Q+VQVFGRK+TATAVA CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 222 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 402 PRRCEPKKFGGPGARARYQKSYR 470
PRRCE KKFGGPGARARYQKSYR
Sbjct: 124 PRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 134 bits (325), Expect = 2e-31
Identities = 59/85 (69%), Positives = 75/85 (88%)
Frame = +3
Query: 42 RAPIQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 221
+ P+Q+VQVFGRK+TATAVA CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 222 SMVDIRVTVKGGGHVAQVYAIRQAI 296
+ VDIRV VKGGGHVAQ+Y Q +
Sbjct: 64 AGVDIRVRVKGGGHVAQIYGESQEL 88
Score = 29.5 bits (63), Expect = 8.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 301 RP*LPSIRNM*TKPQRRKSKTS*FNTIGVCW 393
+P P RNM + RR+SKTS + G CW
Sbjct: 122 KPWWPITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 111 bits (266), Expect = 2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Frame = +3
Query: 51 IQAVQVFGRKQTATAVAXCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 230
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 231 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 374
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 52.8 bits (121), Expect = 8e-07
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +3
Query: 72 GRKQTATAVAXC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 248
G+++TA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 249 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 428
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 382
Query: 429 GGPGARARY 455
G GAR ++
Sbjct: 383 GQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 52.8 bits (121), Expect = 8e-07
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +3
Query: 72 GRKQTATAVAXC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 248
G+++TA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 249 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 428
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 288
Query: 429 GGPGARARY 455
G GAR ++
Sbjct: 289 GQEGARRKF 297
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 2.8
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 159 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 335
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 2.8
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 159 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 335
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophila)
homolog-associated protein 3 protein.
Length = 979
Score = 31.1 bits (67), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 227 GRHQSDSQGWWSCSTSLRYQTSYFKG 304
GRHQ+ S GWWS +L + + G
Sbjct: 251 GRHQAKSTGWWSSDDNLDSDSGFLAG 276
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 2.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 270 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 401
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>AL365410-1|CAB96954.1| 198|Homo sapiens hypothetical protein
protein.
Length = 198
Score = 30.3 bits (65), Expect = 4.9
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = +1
Query: 175 STNF-RNLSFCSARKNSLWS 231
S+NF +N+SFC R++SLWS
Sbjct: 49 SSNFEKNMSFCQIRRDSLWS 68
>M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation
factor 1 protein.
Length = 372
Score = 29.9 bits (64), Expect = 6.5
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 363 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 503
+LV D L +A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 339 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 422
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 339 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 422
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 339 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 422
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein.
Length = 372
Score = 29.9 bits (64), Expect = 6.5
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 363 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 503
+LV D L +A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>AK126054-1|BAC86416.1| 926|Homo sapiens protein ( Homo sapiens
cDNA FLJ44066 fis, clone TESTI4036909, weakly similar
to Regulator of nonsense transcripts 1. ).
Length = 926
Score = 29.5 bits (63), Expect = 8.6
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = +3
Query: 126 LRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKA 305
L P + R+ + K P KF ++ + T+K + QV+ + + + A
Sbjct: 385 LLTTSSPTIVSNKRVSKRKFIPPAFTNVSTKFELLSLGATLKLASELIQVHKLNKDQATA 444
Query: 306 LIAFYQKYVDEASKKEIKDI 365
LI Q S +E+K++
Sbjct: 445 LIQIAQMMASHESIEEVKEL 464
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,096,915
Number of Sequences: 237096
Number of extensions: 1829198
Number of successful extensions: 3872
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3868
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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