Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F07
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    54   2e-08
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   1.7  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   1.7  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   5.1  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    26   5.1  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   6.7  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   6.7  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   8.8  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +2

Query: 353 IAALLGKQAALFVPSGTMANLIAIMVHCNKRGSEAFVGDLSHIYKYEVGGASHLAGVMLS 532
           +A L GK+AALFV SGT  N + I  H ++        D +HIY +E G        ++ 
Sbjct: 70  VAKLTGKEAALFVTSGTQGNQLCIRSHLHQPPHSIICDDRAHIYNWEAGAIGLFTQAIVR 129

Query: 533 TVANKPDGTFDLQELEDR-IRGSNIH 607
            ++ K +     +E+E++ I G++IH
Sbjct: 130 PISPKNNVYITAEEIENKLILGNDIH 155


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 430 HHNGNKISHSSRRYEQSGLLAQ 365
           HHN +K +H SRR+  S  +AQ
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQ 452


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -2

Query: 526 HHSC*M*CSSNFIFINV*EIPDECFRSTL----VTVHHNGNKISHSSRRYEQSGLLAQQC 359
           HH+  +  S++++F ++ + PD   +STL    V        +S   +  E+   L ++ 
Sbjct: 742 HHT--LSASNSYVFTDLVDNPDSMLKSTLKYRFVFKFSPSQPLSSLGKNKEKYDALLERS 799

Query: 358 SYFILPRRSLSDLHRKHH 305
           S+ +LP +S   L+  +H
Sbjct: 800 SHGVLPVQSKMLLYNSNH 817


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 199 LNNCDKMAHVVDLRSD--TVTKPTKAMKHAMVNSA 297
           L+ CDK+   VD+R D   V + T   K  M+ SA
Sbjct: 203 LDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSA 237


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 461 VGDLSHIYKYEVGGAS-HLAGVMLSTVANKPDGTFDLQELEDRIRGSN 601
           VG++  +  Y +GG        +LST  N  DG F   E+   I G N
Sbjct: 427 VGEVVPVLHYTMGGVQVDTQSRVLSTNGNVIDGLFAAGEIVGGIHGEN 474


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 430 HHNGNKISHSSRRYEQSGLLAQQCSYFIL 344
           H NG  +S SS R  Q+GL     S+ +L
Sbjct: 176 HKNGELLSTSSARQNQTGLSYPSVSFSLL 204


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = +1

Query: 229 VDLRSDTVTKPTKAMK----HAMVNSALGDDVYGED 324
           +++RSD V+KP+KA K    +A+ + A   DV+ E+
Sbjct: 577 LNIRSDEVSKPSKASKTLHGYALPSLASPYDVHAEE 612


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 500 GASHLAGVMLSTVANKPDGTFDLQELEDRI 589
           GA H+ GV +S + +K     ++ +L DRI
Sbjct: 76  GAKHVYGVDMSEIIHKAVQIVEVNKLSDRI 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,199
Number of Sequences: 5004
Number of extensions: 40898
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)