Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F07
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0511 - 25800371-25800454,25800563-25800629,25800903-258010...   101   3e-22
01_06_0954 - 33322951-33323606,33324213-33325014                       32   0.32 
03_02_0178 + 6195402-6199158,6199438-6200003                           30   1.7  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    27   9.1  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    27   9.1  

>04_04_0511 -
           25800371-25800454,25800563-25800629,25800903-25801000,
           25801094-25801152,25801247-25801379,25801461-25801532,
           25801628-25801678,25802000-25802111,25802231-25802604
          Length = 349

 Score =  101 bits (243), Expect = 3e-22
 Identities = 47/84 (55%), Positives = 62/84 (73%)
 Frame = +2

Query: 341 WENKIAALLGKQAALFVPSGTMANLIAIMVHCNKRGSEAFVGDLSHIYKYEVGGASHLAG 520
           +E ++A + GK+AALFVPSGTMANLI+++VHC+ RGSE  +GD SHI+ YE GG S + G
Sbjct: 20  FEMEMARITGKEAALFVPSGTMANLISVLVHCDTRGSEVILGDNSHIHIYENGGISTIGG 79

Query: 521 VMLSTVANKPDGTFDLQELEDRIR 592
           V   TV N PDGT D+ ++   IR
Sbjct: 80  VHPKTVRNNPDGTMDIDKIVVAIR 103


>01_06_0954 - 33322951-33323606,33324213-33325014
          Length = 485

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = +2

Query: 380 ALFVPSGTMANLIAIMVHCNKRGSEAFVGDLSHIYKYEVGGASHLAGVMLSTVANKPDGT 559
           A   P+ T+   +   +HC    SE  V     +     GG  HL+ ++    A +   +
Sbjct: 26  AAAAPAPTVWFALKRSLHCRSEPSEVHVPRPKAVAAAAAGGGGHLSAIVTKRAAPRSGCS 85

Query: 560 FDLQELEDRIRGSNIH 607
             +  L D I GS  H
Sbjct: 86  RSIANLRDVIHGSKRH 101


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 214 KMAHVVDLRSDTVTKPTKAMKHAMVNSALGDDVYGEDPTVNALGE*NSCTAGQAGRFV 387
           K + + +  + T T+  K+   A V++  G +V G+D   NAL +   C +      V
Sbjct: 247 KDSMIAEAGTVTHTRHEKSTSDAAVSTGRGHEVQGQDEAANALNQVGQCVSSSGSHKV 304


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 534  PWPINPMALLTCKSWRIELGVRIY 605
            PWP  P+ L  C+SW+I + + ++
Sbjct: 1300 PWP-PPIRLKQCRSWKIGVAISLF 1322


>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 534 PWPINPMALLTCKSWRIELGVRIY 605
           PWP  P+ L  C+SW+I + + ++
Sbjct: 885 PWP-PPIRLKQCRSWKIGVAISLF 907


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,929
Number of Sequences: 37544
Number of extensions: 272100
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)