Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F07
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 569 QELEDRIRGSNIHEPXT 619
           QEL+ R +   IHEP T
Sbjct: 345 QELQKRCKWMGIHEPET 361


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 569 QELEDRIRGSNIHEPXT 619
           QEL+ R +   IHEP T
Sbjct: 345 QELQKRCKWMGIHEPET 361


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 395 SGTMANLIAIMVHCNKRGSEAFV 463
           SGT    I ++  CNK G   +V
Sbjct: 91  SGTREQFIDMVARCNKAGVRIYV 113


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 311 FTVKIRQ*TPWENKIAALLGKQAA 382
           F V  ++  PWE     L+G+ AA
Sbjct: 118 FDVATKEPPPWETDSYKLIGRIAA 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,391
Number of Sequences: 438
Number of extensions: 2754
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)