Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F05
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    29   0.40 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   1.6  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   2.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   8.6  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.6  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 168 FNISSIITLISGFINYLIASDTSVRRYPKERSFDMLKITLINYFFN 305
           F IS +I +  G I  L+   + +RRYP   S  +L +   +YFF+
Sbjct: 237 FFISLLIGVSIGLITALLLKYSYLRRYPSIESCIILLMAYTSYFFS 282


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 329 FIGLILYYIKEIIYQCYLKHIKTPFFWVPSHR 234
           F  L +  I ++I+ C    +  PFFW P HR
Sbjct: 68  FSVLFIRSIVQMIHPCLA--LSDPFFWAPKHR 97


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 167 NAMDIPMTSFLLDSGTLY*KK--PAETLSPXINRLRIGLNT 51
           N   +P  +  LDS  L   +   A +++P  NRL +GLNT
Sbjct: 63  NLKSLPFETLTLDSAPLGPLQFSDAPSMAPENNRLEVGLNT 103


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 245 PSHRGIAGNQIVDKTAYEGNNAADVKNAMDIPMTSFLLDSGTL 117
           P  R I GN +V +T Y  NN   + N  +I     + D+ T+
Sbjct: 781 PYARVIVGNSVVARTVYTPNNLNPIWN--EILYVPIMADTKTI 821


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 341 LNPILSNIEVNYKNWP*TRHYGPS*SIEVLLLGPVLETLPVEKLK*LCSGRYGILYFK 514
           +N  + +  +NY N     +Y  +     LLLG  L  LP  K+    +   G+LY K
Sbjct: 461 INEYMQSAMLNYLNKSFNSYYHAARCF--LLLGQFLSCLPAPKVDDAANWNAGLLYSK 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,629
Number of Sequences: 5004
Number of extensions: 48056
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)