Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_F05
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007632-1|AAH07632.1|  645|Homo sapiens RIMBP2 protein protein.       30   5.5  
AB002316-1|BAA20776.1| 1106|Homo sapiens KIAA0318 protein.             30   5.5  

>BC007632-1|AAH07632.1|  645|Homo sapiens RIMBP2 protein protein.
          Length = 645

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 186 ITLISGFINYLIA-SDTSVRRYPKERSFDMLKITLINY-FFNIIQNEAYKIK 335
           IT IS  +++L   S+ S   +  E  FD++K     Y FFN+  N AYK+K
Sbjct: 310 ITQISAQLSWLPTNSNYSHVIFLNEEEFDIVKAARYKYQFFNLRPNMAYKVK 361


>AB002316-1|BAA20776.1| 1106|Homo sapiens KIAA0318 protein.
          Length = 1106

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 186 ITLISGFINYLIA-SDTSVRRYPKERSFDMLKITLINY-FFNIIQNEAYKIK 335
           IT IS  +++L   S+ S   +  E  FD++K     Y FFN+  N AYK+K
Sbjct: 456 ITQISAQLSWLPTNSNYSHVIFLNEEEFDIVKAARYKYQFFNLRPNMAYKVK 507


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,747,374
Number of Sequences: 237096
Number of extensions: 1501592
Number of successful extensions: 2108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)