Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F04
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 28 0.93
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 28 1.2
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 2.8
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 27 2.8
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 2.8
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 4.9
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 25 6.5
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.5
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 6.5
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 25 8.6
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 8.6
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 25 8.6
>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 28.3 bits (60), Expect = 0.93
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 374 DIYARVPGGPKPEQRFHSFYNY 439
D Y+R+P GP P++ +SF+++
Sbjct: 34 DFYSRLPHGPAPKKSSNSFFSW 55
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -2
Query: 604 IKSFNFSWTQLCGTRPVLG---KRLELIN--KFINKLPQPLVRQLERYRSYRED 458
+ S N W +LCGT+ V K+ L+N K I+ P+P+ + R ED
Sbjct: 21 VNSQNTRWKRLCGTQSVWSPYKKKHVLVNRLKHISLFPKPIFARKFTTRQKSED 74
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 171 PCQAFYNKKTCHIPARSVLWTVLHSRHRIRNLPHYNRRWNTWLLIE 34
PC+A N CHI R+ W R P Y NT L IE
Sbjct: 59 PCKAVLNPY-CHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIE 103
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 455 YILSV--TPVPLELPDQWLWELIDEFVYQFQSF 547
Y++S+ P+P+ L D LW + VYQ +SF
Sbjct: 43 YVMSMLFNPMPVALSDFDLWIKLSSKVYQSESF 75
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 120 VLWTVLHSRHRIRNLPHYNRRWN 52
+L H+R I +LPH+ RRW+
Sbjct: 407 ILQLATHNRSFICSLPHFLRRWS 429
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 431 YNYCDLFNYILSVTPVPLELPDQWLWELIDEFVYQF-QSFAQYRSRTTKLSPAEI 592
Y C ++++ +T VPL WL + Y F ++ A Y + L+ A I
Sbjct: 396 YGLCAFSSFLVVITKVPLHFLPTWLRHVSRIVYYMFSKTSASYVTSPLTLAYASI 450
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 75 GGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKK 179
G Y+S D+ P Y + ++YK ++V K
Sbjct: 217 GAYKSPDDFPEGDFRRKAPRYQKENFYKNLELVTK 251
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 383 ARVPGGPKPEQRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELID 520
A + PKPE + Y DL VTP PLE P E+++
Sbjct: 281 ANITALPKPEPKM---YENSDLTPARTPVTPAPLEKPVNLAPEVVE 323
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 205 INEGVTYEILNLYENTFPTLTEKYFENTPW 294
I+ G YE++NL ++ +T+ + PW
Sbjct: 431 IDGGCVYEVINLVQSVLRRVTKLFQLKEPW 460
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 202 MINEGVTYEILNLYENTFPTLTEKYFENTP 291
+I +G TY + L+ P L +K EN P
Sbjct: 41 LIIKGETYHLHALFLGRSPVLLQKLIENNP 70
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 297 QMKMRSHLLWTMIMYS*SYTKNYTTVTSMQESLEDQNQSSAS 422
Q S +W + ++ K+YT T ++ +EDQ + +++
Sbjct: 431 QFPFESRKIWFPVTHN-ILAKHYTQATKAKQEIEDQQRQASA 471
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 383 HRCHGSIVLCIG 348
H CHG +V+C+G
Sbjct: 272 HLCHGHLVMCMG 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,268
Number of Sequences: 5004
Number of extensions: 49953
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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