Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F04
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 104 6e-23
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 102 3e-22
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 31 0.95
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 29 2.2
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 29 3.8
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 28 5.1
05_01_0031 + 199502-200431 28 6.7
04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222 27 8.9
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 104 bits (249), Expect = 6e-23
Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Frame = +2
Query: 296 PDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPE------QRFHSFYNYCDLFNY 457
P + VSP D D+VF++LY+EL+YR YAR QR S+ NYCDLF+
Sbjct: 67 PAAEAVSPYCDGDHVFLLLYRELWYRHAYARASSSSSSSAPLTAGQRAESWANYCDLFSV 126
Query: 458 ILSVTPVPLELPDQWLWELIDEFVYQFQSFAQYRSRTTKLSPAEIEAL 601
+L V ++LP+QWLW+++DEFVYQFQSF QYR++ S E+ L
Sbjct: 127 VLHGV-VNMQLPNQWLWDMVDEFVYQFQSFCQYRAKLKNKSDDELHQL 173
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 193 FRNMINEGVTYEILNLYENTFPTLTEKYFENTPW 294
+R++ ++ V YEI +YE F L+++ F + PW
Sbjct: 34 YRHVRDKNV-YEIHQMYEGGFQRLSDRLFRDAPW 66
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 102 bits (244), Expect = 3e-22
Identities = 48/102 (47%), Positives = 69/102 (67%)
Frame = +2
Query: 296 PDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVTP 475
P + V+ D D+VF++LY+EL++R +ARV G P QR S+ NYC LF+ +L
Sbjct: 54 PPAEAVAAHCDGDHVFLLLYRELWFRHAHARVQG-LTPAQRAESWDNYCSLFSVVLQGV- 111
Query: 476 VPLELPDQWLWELIDEFVYQFQSFAQYRSRTTKLSPAEIEAL 601
V ++LP+QWLW+++DEFVYQFQSF QYR++ + EI L
Sbjct: 112 VNMQLPNQWLWDMVDEFVYQFQSFCQYRAKLKNKTHEEIALL 153
Score = 30.7 bits (66), Expect = 0.95
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 205 INEGVTYEILNLYENTFPTLTEKYFENTPW 294
I + YE +YE F L++++F +TPW
Sbjct: 24 IRDRNVYETHQMYEGGFTRLSDRHFRDTPW 53
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 76 EVTNPMATMKHSPQNTTSRNMTGLLIIKCLTWSRNSLXYFRNMINEG 216
EV + +A +K S + RN+ GL + TW RN L R +++ G
Sbjct: 39 EVESALALLKKSGGSIDGRNVFGLCALHLATW-RNHLPIVRRLLDAG 84
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -3
Query: 171 PCQAFYNKKT-----CHIPARSVLWTVLHSRHRIRNLPHYNRR 58
PC AF+ K T CH ++ WT + + +NLP NRR
Sbjct: 166 PC-AFWGKGTEPTDHCHATDKNAKWTKMRQSLKRKNLPSSNRR 207
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 42 TTMYSSDDYNEGG---YESYGDYEAQSTEHYEPEYDRS 146
+T S YN+ G Y S G Y ST++YE Y++S
Sbjct: 880 STDNSESGYNKSGTGEYGSGGGYNKSSTDNYESGYNKS 917
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +1
Query: 49 CIPATIIMREVTNPMATMKHSPQNTTSRNMTGLLIIKCLTWSRNSLXYFRNMINEGVTYE 228
C+ + REV N AT+ + N+T++ M G ++ LT+ + + + +G E
Sbjct: 107 CLSSETSTREVQNDKATISNMTNNSTAQ-MAGDAALEKLTYIQK--LQRKEISEKGSCSE 163
Query: 229 ILNLY 243
+LNL+
Sbjct: 164 VLNLF 168
>05_01_0031 + 199502-200431
Length = 309
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 607 SIKSFNFSWTQLCGTRPVLGKRLELINKFINK 512
S++ FN S+ +LCG P R + + F NK
Sbjct: 266 SLQDFNVSYNRLCGELPAGAARFDQYSFFHNK 297
>04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222
Length = 207
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 135 IPARSVLWTVLHSRHRIRNLPHYNRR 58
+P RSV+ TVLH+ + N H RR
Sbjct: 153 VPLRSVVTTVLHAEEKDVNKSHARRR 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,953
Number of Sequences: 37544
Number of extensions: 306196
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -