Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_F04
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical p... 109 2e-24
U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical p... 109 2e-24
AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical ... 49 2e-06
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z81047-4|CAB02831.3| 364|Caenorhabditis elegans Hypothetical pr... 29 2.6
U97403-9|AAB52469.1| 389|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 28 6.0
>U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical
protein C17G10.9a protein.
Length = 537
Score = 109 bits (262), Expect = 2e-24
Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Frame = +2
Query: 296 PDEDEVSPIVDNDN-VFMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVT 472
PDE+ V I+ N +F+ILYKELYYR +YAR GP R+ SF NY +LF+ +LS
Sbjct: 77 PDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFMNYQELFSELLSSK 136
Query: 473 -PVPLELPDQWLWELIDEFVYQFQSFAQYRSRTTKLSPAEIEAL 601
P+PL LP+ WLW++IDEFVYQFQ+F Y++ K + E+E L
Sbjct: 137 DPIPLSLPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDL 180
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 184 LXYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPW 294
L YF M++E EIL LY+ FP LTE++F + W
Sbjct: 40 LVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRDRMW 76
>U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical
protein C17G10.9b protein.
Length = 535
Score = 109 bits (262), Expect = 2e-24
Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Frame = +2
Query: 296 PDEDEVSPIVDNDN-VFMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVT 472
PDE+ V I+ N +F+ILYKELYYR +YAR GP R+ SF NY +LF+ +LS
Sbjct: 75 PDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFMNYQELFSELLSSK 134
Query: 473 -PVPLELPDQWLWELIDEFVYQFQSFAQYRSRTTKLSPAEIEAL 601
P+PL LP+ WLW++IDEFVYQFQ+F Y++ K + E+E L
Sbjct: 135 DPIPLSLPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDL 178
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 184 LXYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPW 294
L YF M++E EIL LY+ FP LTE++F + W
Sbjct: 38 LVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRDRMW 74
>AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical
protein C03H5.5 protein.
Length = 558
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 296 PDEDEVSPIVDNDNV-FMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVT 472
PDE V + +N FM+LYKEL YR + A Q NY +F S+
Sbjct: 139 PDEITVRKSISPENQDFMVLYKELKYRRLNAEA------RQNKDMLENYQSIF----SIL 188
Query: 473 PVPLELPDQWLWELIDEFVYQFQS 544
P L LPD W+ ++++E+V+Q Q+
Sbjct: 189 PGKLNLPDYWILDIMEEYVFQIQT 212
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 81 YESYGDYEAQSTEHYEPEYDRSSY 152
YESYG Y+ HY+P Y SY
Sbjct: 43 YESYGKYDDHKDSHYQPSYYHDSY 66
>Z81047-4|CAB02831.3| 364|Caenorhabditis elegans Hypothetical
protein C41G6.6 protein.
Length = 364
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 282 FKVFLSECGEGILIEVQDLICYTFINHVAKVXQGIS*PCQAFY--NKKTCHIPARSVL 115
F + L E G I V+D+ YT+I+H V + C+ Y N C++ RS L
Sbjct: 174 FDLQLYELGPKFCISVEDVEYYTYIDHFDVVTLYAN-YCEPIYNPNDNLCNVKLRSTL 230
>U97403-9|AAB52469.1| 389|Caenorhabditis elegans Hypothetical
protein T10E9.1 protein.
Length = 389
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 33 ILLTTMYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSY 152
ILL + +DD +E ++Y DY+ +++P+YD Y
Sbjct: 330 ILLGLPHFADDSSEYD-DNYDDYDNDEDSNFDPDYDYERY 368
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Frame = +2
Query: 281 KIHLGPDEDEVSPIVDNDNVFMILYKELYYRDIYARVPG---GPKPEQRFHSFYNYCDLF 451
++ + PD+ + PI+D++ +Y ++ YA V P+ + N+ LF
Sbjct: 995 QVLIDPDDGHIYPILDSNCALEKIYGAFDNKNYYANVQSYDQTPQISLNLDKYTNWKPLF 1054
Query: 452 NY-------ILSVTPVPLELPDQWLWEL 514
N I + T +LP+ W+ EL
Sbjct: 1055 NVNEEPLESIQTATVRYSKLPEDWIVEL 1082
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,221
Number of Sequences: 27780
Number of extensions: 281371
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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